GBrowse Details

Vigan.04G044500.01

Basic Information:
Name: Vigan.04G044500.01
Multiple alignment
Variant Information
Position: Chr04:4045524..4049229 (+ strand)
Length: 3706
Functional Information:
Description: Similar to Uncharacterized protein. [I1KWC5, Glycine max]
InterPro: Membrane-anchored ubiquitin-fold protein, HCG-1 (IPR017000)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.11,11.67,12.76,23.24,16.26,13.70,12.60,16.95
Arabidopsis thaliana homolog: AT5G15460.1
Automatic updates:
Name: NM_001249377 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306015 (LOC100306015), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:4045524..4046268 (+ strand)
Length: 745
Type: five_prime_UTR
Position: Chr04:4046269..4046401 (+ strand)
Length: 133
Type: CDS
Position: Chr04:4047804..4047968 (+ strand)
Length: 165
Type: CDS
Position: Chr04:4048818..4048873 (+ strand)
Length: 56
Type: CDS
Position: Chr04:4048874..4049229 (+ strand)
Length: 356
Type: three_prime_UTR


>Vigan.04G044500.01
AAAATAAAGC ATCCACTTTC CCTTTTTCTT CTTCTTGTTC TTCGTCTTCC ATTTGGGTTT TCCCAAAAGT GAAAAGCCAA
TTCACCCCTC AGATCAGTGA CGCACATACC CATCTAAGAA ACCCCACATC AACAAAAACT CAGGTTTTTC CATAATCTGT
TCTTTTTTTT TTCTTCCTTT TCTCAATCCT TGCTTGTTTT GCAGGTGACC CAGTTGAAAA TTCGAGATTA TTTTTTCTTG
TTTGATGCGT ACCCATTTCA AGATTGGATC TCTTCTTGAT TTAGCTGTTT GAGATTCTCT CTTTTTTTTT TGGCTGGCGA
CAGTGTGTTG AATTATGTTA TGATGTTGGA TTTCAACAAT TTCATTACCC TTTTTTGTAA TTTGTTTTTA TTTTGTGAGA
AGATGTATCC ACCTCAGTTA TTCACGATTT CTTCGTTCAT ATTCTTATTA AACGATTTTT TTCATAAGAA ATTTTCATAC
CTCTCCAAAT TTTTCCTGAT ATAATAGATT CTAATATGTT TAGTGAGCAT GGATGCGTGC ATGAGAGGGC TCTAACTCAA
CCTTTTCTTT TGTGTCTGAA CTTTGCAGAA CTCACAAGAT TGGCTTTGAA TGAAATCCTG TTTTTCACTG ATGAAACTTA
GCTGAACGAA TTGATTCAGT GGAAAACCTA TTTTTCATAA TATTTGACGT AAAACTGAAG CTGTAATATT TCTTTTAACT
ACACGAGTTC GTTGGATCTC CGAACATGGC TGGGAATCAA GATCAGTTTG AGATCAAGTT TCGGCTGACT GATGGCTCTG
ATATTGGCCC GAAAAGTTTT CCTGCAGCTA CTAGTATTGC AACATTAAAG GAGAGTGTTC TTGCTCAGTG GCCAAAAGAC
AAGGAGAATG GACCAAGGAC CATAAAAGAT GTGAAGTTGA TCAGCGCAGG AAAAATATTG GAGAACAACA GAACAGTTGG
GGAATGCCAG AGCCCATTAT GTGATACTCC TGATACAGTT ACGACAATGC ATGTGGTTGT CCAACATCCT GCTACAGAGA
AAGAGAAGAA AGCTGCAAGC CAAGCAACAC AGAACAAATG TATGTGTATT ATCTTATAGC ATCCAGATTG AATAGCAGAT
GTCATCTATC TTAGAAGGTT AGGGACACTT CATTTTTACG TAACCTGCGG CGTTGAAGAT TTCAACATAC ACAGATTATT
TGGTTGCATG TGTCATTCAT ACTACAGGCA AAGAGTACTG GACTGTTTAC CTAAAAAAAG CACTTTACTT GGTGAAGATT
GTGAAACTAG TAGTTCCCTG ATTCCTCTGC GGCTCTATAT TTCTTGCACA ATTTGATAGG AGATGTTCTT CTGCTGGTCT
CAACATGTAT TAGGTGTTGC CTCATCAGGC ACTTGTTATA TTGAAATGAA CAATACTAGT TTGCCATCTT GCACCTCATA
TATACTTTAC AATTC

>Vigan.04G044500.01
ATGGCTGGGA ATCAAGATCA GTTTGAGATC AAGTTTCGGC TGACTGATGG CTCTGATATT GGCCCGAAAA GTTTTCCTGC
AGCTACTAGT ATTGCAACAT TAAAGGAGAG TGTTCTTGCT CAGTGGCCAA AAGACAAGGA GAATGGACCA AGGACCATAA
AAGATGTGAA GTTGATCAGC GCAGGAAAAA TATTGGAGAA CAACAGAACA GTTGGGGAAT GCCAGAGCCC ATTATGTGAT
ACTCCTGATA CAGTTACGAC AATGCATGTG GTTGTCCAAC ATCCTGCTAC AGAGAAAGAG AAGAAAGCTG CAAGCCAAGC
AACACAGAAC AAATGTATGT GTATTATCTT ATAG

>Vigan.04G044500.01
MAGNQDQFEI KFRLTDGSDI GPKSFPAATS IATLKESVLA QWPKDKENGP RTIKDVKLIS AGKILENNRT VGECQSPLCD
TPDTVTTMHV VVQHPATEKE KKAASQATQN KCMCIIL*