GBrowse Details

Vigan.04G047800.01

Basic Information:
Name: Vigan.04G047800.01
Multiple alignment
Variant Information
Position: Chr04:4244731..4249605 (- strand)
Length: 4875
Functional Information:
Description: Similar to Uncharacterized protein. [I1N4F6, Glycine max]
GO: Molecular Function: catalytic activity (GO:0003824)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (IPR000277)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:103.82,113.22,54.82,151.96,151.52,96.68,72.49,71.75
Arabidopsis thaliana homolog: AT1G33320.1, AT3G01120.1
Automatic updates:
Name: NM_001279021 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum cystathionine gamma-synthase, chloroplastic-like (LOC101491511), mRNA; nuclear gene for chloroplast product.
PubMed ID: 23527638 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:4244731..4244935 (- strand)
Length: 205
Type: three_prime_UTR
Position: Chr04:4244936..4245059 (- strand)
Length: 124
Type: CDS
Position: Chr04:4245248..4245366 (- strand)
Length: 119
Type: CDS
Position: Chr04:4245504..4245599 (- strand)
Length: 96
Type: CDS
Position: Chr04:4246310..4246417 (- strand)
Length: 108
Type: CDS
Position: Chr04:4246505..4246591 (- strand)
Length: 87
Type: CDS
Position: Chr04:4246696..4246899 (- strand)
Length: 204
Type: CDS
Position: Chr04:4246999..4247058 (- strand)
Length: 60
Type: CDS
Position: Chr04:4247648..4247816 (- strand)
Length: 169
Type: CDS
Position: Chr04:4247902..4247975 (- strand)
Length: 74
Type: CDS
Position: Chr04:4248078..4248181 (- strand)
Length: 104
Type: CDS
Position: Chr04:4248619..4249078 (- strand)
Length: 460
Type: CDS
Position: Chr04:4249079..4249605 (- strand)
Length: 527
Type: five_prime_UTR


>Vigan.04G047800.01
ATAAAATCGA TTAGCTAATA GTGATAATAA TGACGTGTTT ACCTATTGAC GTGTTGGTGT TGAAAACTCA AAAAGTTAAC
ATCTGAAAAC AAGGCAATAG CTTTGAACAG CTGAAAAAAT CAGGAAAACA GGAGCCGTGA GATTTAAGAC GAACGCTCCA
GACCGAGCCA GGCTTGAGTT GTAAGTCGAA ACGGCGCATG AAGCCATCAT GAGTCGTTGG ATGAAAATCG AAGGGCTGAG
TTTTGCAGAG TTCACGATCT GTAATTCGGT GGGTGTAGGA GATGCAAAAT CCCTTTCAGT AGTAGTGATG ATAAAAAGGG
AAAAAGAAGA GGACAAATGA GTGACGCGTA TATACTGTTT ATATTTTAAA GTTGAGTATT ATATAAGGGC GTGAGGGATC
CATTTGCGAA TGGAAGAGTT TAGAGATTGG TTTTGGTAGT ATAGATAGAG GAGAGAAAGA GGGAAGTTGG TGAAGGAGAA
CAACAGAAAC ATATCACACG AACAAAACCC TTGAAACGAC GACAAACATG GCCGTTTCGA GTTCACACAT GCGTTCCACC
TTCGAGTGCC GCTCCGATCC CGATTTCTCG CCACCGCCGT CATTCGACAA CCTCCGCCGC CGCAACTTCC GCTCCTCCGC
CGGATCCGGC GCTGCGTTCC ACGGCGTCTC CTCCCGCATC CTCCGCTTCC CTCCCAACTT CCAGCGCCAG CTCAGCACCA
AGGCGCGACG CAACTGTAGC AACATCGGCG TCGCGCAAAT CGTAGCCGCT TCGTGGTCCA ATAACAACGC CAACAATCCC
GCCGCCGGGG CTCCGGCGCC GCCCGCGGTT TCGGCCGCGG ACGCTGCCAC GGTGCCTCTC CCTGTCGACA TCACCGCTGA
GGACGACGCC GTCGCCGCCG CGGCCGATGA GAACGGGGCT GTACAGTTAA ATCATAGTTC TTATTCTTCG TTTTTGAAAT
CTGATGCAAG CAAAACGATT CATGCCGCTG AAAGACTGGG TAGAGGTATT GTGACTGATG GAATTACCAC TCCTGTGGTG
AACACTTCTG CTTACTTCTT TAAGAAAACC GCTGATCTCA TTGATTTCAA GGAGAATCGC CAGGTTAGTT ATGAGTACGG
GCGATATGGA AATCCAACGA CTGTGGTTCT AGAGGAGAAG ATAAGTGCAC TGGAGGGGGC CGAATCAACT GTGATAATGG
CATCTGGGAT GTGTGCTAGC ATAGTCCTAT TTCTGGCACT GATTCCAGCT GGTGGACATC TTGTGACCAC TACAGATTGT
TATAGGAAGA CTAGGATATT CATAGAGACA TTTCTTCCAA AGATGGGGAT CTCGACCACT GTAATTGATC CAGCAGATGT
TGGAGCTTTA GAAACTGCAC TGGAGCAGCA CAATGTGTCT CTGTTCTTTA CTGAGTCTCC TACCAATCCA TTCCTCAGAT
GTGTTGACAT TAAGCTGGTT TCAGAGCTTT GCCACAAGAA GGGGACTTTA CTCTGCATTG ATGGTACATT TGCAACACCT
TTGAACCAGA AGGCCCTTGC CCTTGGTGCT GATCTGATTC TGCACTCCTT AACAAAATAC ATGGGTGGAC ATCATGATGT
CCTTGGCGGT TGCATAAGTG GTTCAACTAA GGTGGTTTCA CAAATTCGGA CTTTTCACCA TATTTTGGGC GGTACACTTA
ACCCGAATGC TGCATACCTA TTAATCAGAG GCATGAAAAC GCTGCATCTT CGTGTACAGC AGCAGAATTC AACTGGAATG
GGGATGGCCA AAATTTTAGA GGCACATCCC AAGGTGAAGC GGGTCTATTA TCCAGGCTTG CCGAGTCATC CCGAACACGA
GCTTGCCAAG AGGCAGATGA CTGGTTTCGG TGGTGTTGTC AGTTTTGAGA TCGATGGAGA CCTACATACC ACAATAAAAT
TTGTTGATTC CCTGAAAATC CCATATATTG CGGCCTCGTT TGGTGGCTGT GAGAGCATTG TGGATCAACC TGCTATTTTG
TCTTACTGGG ATCTTCCTCA GTCAGAAAGG GCTAAGTATA AGATTCATGA CAACTTGGTT CGCTTCAGCT TTGGAGTTGA
AGATTTTGAG GATTTGAAGG CTGATGTCCT GCAGGCTCTG GAAGCTATAT AGTTCAGTTT TCCTGATTCA CCCAAGTTAT
TTTATAATCG TGCTATTCTG TTTCTTTTTG TCATCACGTC TGGCGATTTA ATTCAATTTT GATCGTCTAG TGTTCTGTTG
ATCTTGTGTT AAGGATGATT TGTCTCTGAT TTCGATGTTA TGAACCTTAT GAATTATTGA AATTAAAAGT CTATTTGATG
TCCGCTTTTC CTGCAAC

>Vigan.04G047800.01
ATGGCCGTTT CGAGTTCACA CATGCGTTCC ACCTTCGAGT GCCGCTCCGA TCCCGATTTC TCGCCACCGC CGTCATTCGA
CAACCTCCGC CGCCGCAACT TCCGCTCCTC CGCCGGATCC GGCGCTGCGT TCCACGGCGT CTCCTCCCGC ATCCTCCGCT
TCCCTCCCAA CTTCCAGCGC CAGCTCAGCA CCAAGGCGCG ACGCAACTGT AGCAACATCG GCGTCGCGCA AATCGTAGCC
GCTTCGTGGT CCAATAACAA CGCCAACAAT CCCGCCGCCG GGGCTCCGGC GCCGCCCGCG GTTTCGGCCG CGGACGCTGC
CACGGTGCCT CTCCCTGTCG ACATCACCGC TGAGGACGAC GCCGTCGCCG CCGCGGCCGA TGAGAACGGG GCTGTACAGT
TAAATCATAG TTCTTATTCT TCGTTTTTGA AATCTGATGC AAGCAAAACG ATTCATGCCG CTGAAAGACT GGGTAGAGGT
ATTGTGACTG ATGGAATTAC CACTCCTGTG GTGAACACTT CTGCTTACTT CTTTAAGAAA ACCGCTGATC TCATTGATTT
CAAGGAGAAT CGCCAGGTTA GTTATGAGTA CGGGCGATAT GGAAATCCAA CGACTGTGGT TCTAGAGGAG AAGATAAGTG
CACTGGAGGG GGCCGAATCA ACTGTGATAA TGGCATCTGG GATGTGTGCT AGCATAGTCC TATTTCTGGC ACTGATTCCA
GCTGGTGGAC ATCTTGTGAC CACTACAGAT TGTTATAGGA AGACTAGGAT ATTCATAGAG ACATTTCTTC CAAAGATGGG
GATCTCGACC ACTGTAATTG ATCCAGCAGA TGTTGGAGCT TTAGAAACTG CACTGGAGCA GCACAATGTG TCTCTGTTCT
TTACTGAGTC TCCTACCAAT CCATTCCTCA GATGTGTTGA CATTAAGCTG GTTTCAGAGC TTTGCCACAA GAAGGGGACT
TTACTCTGCA TTGATGGTAC ATTTGCAACA CCTTTGAACC AGAAGGCCCT TGCCCTTGGT GCTGATCTGA TTCTGCACTC
CTTAACAAAA TACATGGGTG GACATCATGA TGTCCTTGGC GGTTGCATAA GTGGTTCAAC TAAGGTGGTT TCACAAATTC
GGACTTTTCA CCATATTTTG GGCGGTACAC TTAACCCGAA TGCTGCATAC CTATTAATCA GAGGCATGAA AACGCTGCAT
CTTCGTGTAC AGCAGCAGAA TTCAACTGGA ATGGGGATGG CCAAAATTTT AGAGGCACAT CCCAAGGTGA AGCGGGTCTA
TTATCCAGGC TTGCCGAGTC ATCCCGAACA CGAGCTTGCC AAGAGGCAGA TGACTGGTTT CGGTGGTGTT GTCAGTTTTG
AGATCGATGG AGACCTACAT ACCACAATAA AATTTGTTGA TTCCCTGAAA ATCCCATATA TTGCGGCCTC GTTTGGTGGC
TGTGAGAGCA TTGTGGATCA ACCTGCTATT TTGTCTTACT GGGATCTTCC TCAGTCAGAA AGGGCTAAGT ATAAGATTCA
TGACAACTTG GTTCGCTTCA GCTTTGGAGT TGAAGATTTT GAGGATTTGA AGGCTGATGT CCTGCAGGCT CTGGAAGCTA
TATAG

>Vigan.04G047800.01
MAVSSSHMRS TFECRSDPDF SPPPSFDNLR RRNFRSSAGS GAAFHGVSSR ILRFPPNFQR QLSTKARRNC SNIGVAQIVA
ASWSNNNANN PAAGAPAPPA VSAADAATVP LPVDITAEDD AVAAAADENG AVQLNHSSYS SFLKSDASKT IHAAERLGRG
IVTDGITTPV VNTSAYFFKK TADLIDFKEN RQVSYEYGRY GNPTTVVLEE KISALEGAES TVIMASGMCA SIVLFLALIP
AGGHLVTTTD CYRKTRIFIE TFLPKMGIST TVIDPADVGA LETALEQHNV SLFFTESPTN PFLRCVDIKL VSELCHKKGT
LLCIDGTFAT PLNQKALALG ADLILHSLTK YMGGHHDVLG GCISGSTKVV SQIRTFHHIL GGTLNPNAAY LLIRGMKTLH
LRVQQQNSTG MGMAKILEAH PKVKRVYYPG LPSHPEHELA KRQMTGFGGV VSFEIDGDLH TTIKFVDSLK IPYIAASFGG
CESIVDQPAI LSYWDLPQSE RAKYKIHDNL VRFSFGVEDF EDLKADVLQA LEAI*