GBrowse Details

Vigan.04G049600.01

Basic Information:
Name: Vigan.04G049600.01
Multiple alignment
Variant Information
Position: Chr04:4403573..4408892 (- strand)
Length: 5320
Functional Information:
Description: Similar to Starch synthase IIb. [B9VJT3, Vigna radiata]
GO: Biological Process: biosynthetic process (GO:0009058)
Biological Process: glucan biosynthetic process (GO:0009250)
Molecular Function: starch synthase activity (GO:0009011)
InterPro: Glycosyl transferase, family 1 (IPR001296)
Glycogen/starch synthase, ADP-glucose type (IPR011835)
Starch synthase, catalytic domain (IPR013534)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.38,23.81,14.79,26.83,4.33,5.38,1.94,10.92
Arabidopsis thaliana homolog: AT3G01180.1
Automatic updates:
Name: NM_001317304 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata granule-bound starch synthase 2, chloroplastic/amyloplastic-like (LOC106759330), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:4403573..4403886 (- strand)
Length: 314
Type: three_prime_UTR
Position: Chr04:4403887..4404843 (- strand)
Length: 957
Type: CDS
Position: Chr04:4405351..4405524 (- strand)
Length: 174
Type: CDS
Position: Chr04:4405769..4405813 (- strand)
Length: 45
Type: CDS
Position: Chr04:4406065..4406175 (- strand)
Length: 111
Type: CDS
Position: Chr04:4406276..4406353 (- strand)
Length: 78
Type: CDS
Position: Chr04:4406522..4406586 (- strand)
Length: 65
Type: CDS
Position: Chr04:4406987..4407470 (- strand)
Length: 484
Type: CDS
Position: Chr04:4408340..4408588 (- strand)
Length: 249
Type: CDS
Position: Chr04:4408589..4408892 (- strand)
Length: 304
Type: five_prime_UTR


>Vigan.04G049600.01
AAAATGTTCT TCCTTCCCAT TTCTGCTCCA AAATCATCTG TCATTTCCAA CCTCAAACTC CTCCATGCTT TCAATTTCTG
TGGGACCCAC CTAGTGGATT TTCTTCCTCC CAATTTCTCT ATTACTTATA AATGTATAAA TGTAGGTTTA ATTAATTGGC
CTTTGTTTTT GACAGATGTA CTCATTCAGT TCAAGTTTCA CAGTTTAGCT CTTTCTACAC CTTCTAATCC TTCAACTACA
AAATCCTTAT CATCTCTGCT AAGTTTGTGA AACCAATTAG CCTTGTTGTT ATTCTTAGCT TCTCATGGCG TCATCAATAA
GTGCTCAAGC TTTGATTCTG CTTCACAGCA GAGGAAACCC TTGTCTCAGA TTTCCACAGA AGAACGGTGT CGTATTTGAG
CATTCGCAAA GCTTGGGAAT CAGTATGCGC ATAAGGGCAA CAGGTGGCAG CAGTTTTGGG ACAGATGAGG ATAAAGATGG
CGCAGAAGAA GTTGTGGGCA TCAATGAAAA GAAAAATAAG GTGCTAGCTT TGCAAAAGGA TCTCCTTCAA CAGGTTGCGG
AAATAAAGAA ACTGGTTTCT TCCGAAAAGA GTGAGAACAT TCTTGGATCA GAATTGAACA GGACGTCTTA TGAACTCGCC
AACAAATCTT TCACAAATAA ACCAAGTCCA CAGAATGCTT CCACCAGGGG TGACAATACA GTTAAAAACC AAAATGGAAT
TATTGCTTCA CCAAACTATG TCCATCCTAG TGAAGGGTCT GTGGAATTCT CACCTGAAAA GGCTTCCTCT TCCATATATT
TAAATGAAAA GCTGAAAGAC AAGACACATG AGACTAATAG GCCTGATACT CTCTCGGCCT TCTTTGCAAA TGGTACTGAA
AATTTGAGTC TAGAGGTTGA GAATCAGGAA GGTACGAGTG AATCTACTAC CCCTATTGAG AGTGAAGGTG AAACAGAAAC
ACCCCAACCT TTGGCAGGGA TCAATGTCAT GAATGTCATA TTGGTCGCAG CAGAATGTGC TCCCTGGTCA AAAACAGGTG
GGCTTGGTGA TGTAGTTGGT TCCTTGCCAA AGGCTTTGGC CAAACGTGGA CATAGAGTTA TGGTTGTGGC ACCTCACTAT
GGTAATTATG CGGAAGCCCA AGATACAGGG GTGCGAAAAT GGTACAAAGT AGATGGTCAT GAGGCGGAAG TAAAATATTT
CCAAGCCTAC ATCGATGGTG TAGATTTCGT TTTCATTGAC AATCCACTTT TTCATCATCT AGAACGTAAC ATATATGGGG
GAAGCCGATT GGATATTCTA AAACGTATGG TGCTGTTTTG CAAGGCAGCA GTTGAGGTTC CATGGCACGT TCCATGTGGA
GGTGTTTGCT ATGGAGATGG AAATTTAGCC TTCATAGCAA ATGATTGGCA TACTGCATTG CTGCCTGTGT ATCTGAAGGC
GTATTATCGT GAGCAGGGTT TGATGAAGTA TACAAGATCA ATTCTAGTGA TTCATAACAT AGCTCATCAG GGTAGGGGGC
CTGTTGATGA TTTTTTCTTT GTGGATTTAC CTGAACACCA CATGGACCTT TTCAAATTAT ATGACCCCAT TGGAGGTGAC
CATTTCAACA TCTTTGCCGC TGGTTTAAAG ACAGCAGACC GTGTTGTCAC TGTTAGTCAT GGGTATGCAA GGGAGCTGAA
AACTTCTGAA GGTGGTTGGG GCTTGCATGG GATCATAAAC GAGAATGATT GGAAATTGAG GGGCATTGTG AATGGAATTG
ACAACAAAGA TTGGAACCCT CTGTTTGATG TTCACTTGAA ATCAGATGGC TACACTAACT ACTCCCTTGA GACACTTTCT
AGTGGCAAAC GGCAATGTAA AACAGCATTG CAAAAGGAGC TTGGTTTGCC TATACGTGAG GATGTCCCAC TAATTGGCTT
CATTGGAAGG TTGGATCCAC AGAAAGGAGT TGATATCATA GCTGAAGCAA TTCCTTGGTT GATGAGTCAG GATGTGCAAT
TAGTCATGTT AGGCTCTGGA AGGCCTGATC TAGAACACAT GCTTAGGCAA TTTGAAAGCC AACACAATGA CAAGATAAGG
GGGTGGGTTG GCTTTTCAGT GAAGATGGCT CACAGGATAA CTGCAGGCGC AGACATATTG CTCATGCCAT CAAGGTTTGA
GCCATGTGGA TTGAACCAAC TCTATGCCAT GAACTATGGA ACAGTTCCTG TTGTACATGC TGTTGGTGGA CTGAGAGACA
CAGTGCAGCC TTTTGATCCT TTCAGTGAGT CTGGCCTTGG GTGGACATTT GAAAGTGCTG ATTCAGGTAA GTTATCGAAT
GCATTAGGGA ACTGCCTATG GACCTATAGG GAGTATAAGA AGAGCTGGGA AGGCCTCCAA AGGAGAGGAA TGACACAAGA
TCTTAGTTGG GACAATGCTG CTCTGCAGTA TGAGGAGGTG CTTCTTGCAG CCAAATACCA ATGGTGAACA TTTTGCATTT
ATTTCCATCA ATGTAAACTT TTGGAGCTAA TTCATGTTGA ATAGTTTCAT TGTACTAATT GTTGTACGAG GGAAAATAAC
CGTGCAAGCT GTTTAAATTC TACAGGTTAT AGTTAGAGGG TTTATGATGG GGATTGGAAA GCGAAATTTT GGCGCTATAA
GGATTGTGTA ACTTTAATGT TGTAGATTGC AAGTGTTCAG AAGCTCAGAT GTACTAATTA TAGTATGCAG ATCTGACTTT
CTATGATACG GTTTTAGCTT GATTTCTCAG ATTCCTCGTT TAGTATCTCA GTTTGTTTAC A

>Vigan.04G049600.01
ATGGCGTCAT CAATAAGTGC TCAAGCTTTG ATTCTGCTTC ACAGCAGAGG AAACCCTTGT CTCAGATTTC CACAGAAGAA
CGGTGTCGTA TTTGAGCATT CGCAAAGCTT GGGAATCAGT ATGCGCATAA GGGCAACAGG TGGCAGCAGT TTTGGGACAG
ATGAGGATAA AGATGGCGCA GAAGAAGTTG TGGGCATCAA TGAAAAGAAA AATAAGGTGC TAGCTTTGCA AAAGGATCTC
CTTCAACAGG TTGCGGAAAT AAAGAAACTG GTTTCTTCCG AAAAGAGTGA GAACATTCTT GGATCAGAAT TGAACAGGAC
GTCTTATGAA CTCGCCAACA AATCTTTCAC AAATAAACCA AGTCCACAGA ATGCTTCCAC CAGGGGTGAC AATACAGTTA
AAAACCAAAA TGGAATTATT GCTTCACCAA ACTATGTCCA TCCTAGTGAA GGGTCTGTGG AATTCTCACC TGAAAAGGCT
TCCTCTTCCA TATATTTAAA TGAAAAGCTG AAAGACAAGA CACATGAGAC TAATAGGCCT GATACTCTCT CGGCCTTCTT
TGCAAATGGT ACTGAAAATT TGAGTCTAGA GGTTGAGAAT CAGGAAGGTA CGAGTGAATC TACTACCCCT ATTGAGAGTG
AAGGTGAAAC AGAAACACCC CAACCTTTGG CAGGGATCAA TGTCATGAAT GTCATATTGG TCGCAGCAGA ATGTGCTCCC
TGGTCAAAAA CAGGTGGGCT TGGTGATGTA GTTGGTTCCT TGCCAAAGGC TTTGGCCAAA CGTGGACATA GAGTTATGGT
TGTGGCACCT CACTATGGTA ATTATGCGGA AGCCCAAGAT ACAGGGGTGC GAAAATGGTA CAAAGTAGAT GGTCATGAGG
CGGAAGTAAA ATATTTCCAA GCCTACATCG ATGGTGTAGA TTTCGTTTTC ATTGACAATC CACTTTTTCA TCATCTAGAA
CGTAACATAT ATGGGGGAAG CCGATTGGAT ATTCTAAAAC GTATGGTGCT GTTTTGCAAG GCAGCAGTTG AGGTTCCATG
GCACGTTCCA TGTGGAGGTG TTTGCTATGG AGATGGAAAT TTAGCCTTCA TAGCAAATGA TTGGCATACT GCATTGCTGC
CTGTGTATCT GAAGGCGTAT TATCGTGAGC AGGGTTTGAT GAAGTATACA AGATCAATTC TAGTGATTCA TAACATAGCT
CATCAGGGTA GGGGGCCTGT TGATGATTTT TTCTTTGTGG ATTTACCTGA ACACCACATG GACCTTTTCA AATTATATGA
CCCCATTGGA GGTGACCATT TCAACATCTT TGCCGCTGGT TTAAAGACAG CAGACCGTGT TGTCACTGTT AGTCATGGGT
ATGCAAGGGA GCTGAAAACT TCTGAAGGTG GTTGGGGCTT GCATGGGATC ATAAACGAGA ATGATTGGAA ATTGAGGGGC
ATTGTGAATG GAATTGACAA CAAAGATTGG AACCCTCTGT TTGATGTTCA CTTGAAATCA GATGGCTACA CTAACTACTC
CCTTGAGACA CTTTCTAGTG GCAAACGGCA ATGTAAAACA GCATTGCAAA AGGAGCTTGG TTTGCCTATA CGTGAGGATG
TCCCACTAAT TGGCTTCATT GGAAGGTTGG ATCCACAGAA AGGAGTTGAT ATCATAGCTG AAGCAATTCC TTGGTTGATG
AGTCAGGATG TGCAATTAGT CATGTTAGGC TCTGGAAGGC CTGATCTAGA ACACATGCTT AGGCAATTTG AAAGCCAACA
CAATGACAAG ATAAGGGGGT GGGTTGGCTT TTCAGTGAAG ATGGCTCACA GGATAACTGC AGGCGCAGAC ATATTGCTCA
TGCCATCAAG GTTTGAGCCA TGTGGATTGA ACCAACTCTA TGCCATGAAC TATGGAACAG TTCCTGTTGT ACATGCTGTT
GGTGGACTGA GAGACACAGT GCAGCCTTTT GATCCTTTCA GTGAGTCTGG CCTTGGGTGG ACATTTGAAA GTGCTGATTC
AGGTAAGTTA TCGAATGCAT TAGGGAACTG CCTATGGACC TATAGGGAGT ATAAGAAGAG CTGGGAAGGC CTCCAAAGGA
GAGGAATGAC ACAAGATCTT AGTTGGGACA ATGCTGCTCT GCAGTATGAG GAGGTGCTTC TTGCAGCCAA ATACCAATGG
TGA

>Vigan.04G049600.01
MASSISAQAL ILLHSRGNPC LRFPQKNGVV FEHSQSLGIS MRIRATGGSS FGTDEDKDGA EEVVGINEKK NKVLALQKDL
LQQVAEIKKL VSSEKSENIL GSELNRTSYE LANKSFTNKP SPQNASTRGD NTVKNQNGII ASPNYVHPSE GSVEFSPEKA
SSSIYLNEKL KDKTHETNRP DTLSAFFANG TENLSLEVEN QEGTSESTTP IESEGETETP QPLAGINVMN VILVAAECAP
WSKTGGLGDV VGSLPKALAK RGHRVMVVAP HYGNYAEAQD TGVRKWYKVD GHEAEVKYFQ AYIDGVDFVF IDNPLFHHLE
RNIYGGSRLD ILKRMVLFCK AAVEVPWHVP CGGVCYGDGN LAFIANDWHT ALLPVYLKAY YREQGLMKYT RSILVIHNIA
HQGRGPVDDF FFVDLPEHHM DLFKLYDPIG GDHFNIFAAG LKTADRVVTV SHGYARELKT SEGGWGLHGI INENDWKLRG
IVNGIDNKDW NPLFDVHLKS DGYTNYSLET LSSGKRQCKT ALQKELGLPI REDVPLIGFI GRLDPQKGVD IIAEAIPWLM
SQDVQLVMLG SGRPDLEHML RQFESQHNDK IRGWVGFSVK MAHRITAGAD ILLMPSRFEP CGLNQLYAMN YGTVPVVHAV
GGLRDTVQPF DPFSESGLGW TFESADSGKL SNALGNCLWT YREYKKSWEG LQRRGMTQDL SWDNAALQYE EVLLAAKYQW
*