VIGGS:GBrowse

Vigan.04G050800.01

Basic Information:

Name:	Vigan.04G050800.01 Multiple alignment Variant Information
Position:	Chr04:4548631..4552409 (+ strand)
Length:	3779

Functional Information:

Description:	Similar to Uncharacterized protein. [I1L5X7, Glycine max]
GO:	Biological Process: transport (GO:0006810)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: transporter activity (GO:0005215)
InterPro:	Major intrinsic protein (IPR000425)
	Major intrinsic protein, conserved site (IPR022357)
	Aquaporin-like (IPR023271)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.58,0.24,37.40,25.25,7.87,14.21,560.67,11.25

Automatic updates:

Name:	NM_001253261 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max aquaporin NIP2-1-like (LOC100788071), mRNA.
PubMed ID:	23771580 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001367513 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative Si transporter NIP2-1 (NIP2-1), mRNA.
PubMed ID:	30634702 NCBI(pubmed)
PubMed ID:	23771580 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:4548631..4548883 (+ strand)
Length:	253
Type:	five_prime_UTR

Position:	Chr04:4548884..4549024 (+ strand)
Length:	141
Type:	CDS

Position:	Chr04:4549130..4549354 (+ strand)
Length:	225
Type:	CDS

Position:	Chr04:4551241..4551435 (+ strand)
Length:	195
Type:	CDS

Position:	Chr04:4551524..4551585 (+ strand)
Length:	62
Type:	CDS

Position:	Chr04:4551788..4552031 (+ strand)
Length:	244
Type:	CDS

Position:	Chr04:4552032..4552409 (+ strand)
Length:	378
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G050800.01
TATAGGGCGA CATTGAAGCT GGGAAAGCCC ATTGAAGGTG AGTGACGTAA TCGAAGTGTC ACCCAATTTC ACGGTCTACT
CTTTAGGAAT TTTTATTTCT CACACCTACT TACTCACCAT GTGGAATAGA TGAACCAAGA GGTACTCGCA TTTCTGGCAT
TATAAAAGGA CCGATTATCA TCCACTTCTA TCATAGATAG CTAACATACA CTTCACTTCT CTCAGATACT AGCCTGGTCC
ATAGTAACCA ACAATGGAAG GTACCAGCCC AAACACGTTT ACCTTCATCA CCACCACCAT CGACGCTCCA AGTCCAAGCA
ACCCTGAGAT ATCACCATCT CCTTCTGCTC TTTCAGGACT CGCACAAACT TACCCTCCTG GTTTTTCCAG AAAGGTGTTT
GCGGAGGTTA TCGGAACGTT TCTGTTGGTG TTCGTGGGAA GTGGTTCTGC GGGTCTCAGT GTTATTGATG AGAGCAGAGT
GTCAAAGCTC GCAGCTTCGC TTGCTGCAGG ACTCATCGTC ACAGTGATGA TTTACTCAAT TGGACACATT TCTGGAGCAC
ACATGAACCC TGCGGTTTCC CTTGCTTTTG CTGCCGTGAG GCATTTTCCG TGGCCACAGG TCCCGTTTTA CGTAGTAGCT
CAACTCACTG GATCCATTTC TGCTTCATAC ACATTGCGAG AGCTTTTCCA GCCATCAAAG GAAATTGGGG GAACAACACC
TGCTGGATCA CATATCCAAG CACTGATCGT GGAAATGGTG ACTACTTTCA CCATGGTGTT CATTTCCATG GCCGTGGCCA
CTGACACAAA CGCTACAGGA CAACTATCAG GAGTAGCAGT AGGTTGTTCT GTTAGCATAT CAAGCATTGT TGCCGGACCA
ATATCGGGGG GATCAATGAA CCCAGCAAGG ACATTAGGTC CTGCAATTGC AACATCAACC TACAAGGGAC TTTGGGTATA
TTTTGTTGGA CCAATTACTG GGGCAGTTTT AGCAGCATGG TCTTACAACG TGATTAGGGA CACGGAACAC CCTGGTTTTC
CATTTTCACT ATCCTCCCTT TCATTCAAGG TACGCCAAAG CGTTAGTGGA ACCAAAACCG ACCAACGAAG CTTGGTTTGA
AAACAACCGT GTAATGTTTT CCACACCGCC CAAATCAACG TCACCTTGAA TGTCTTGTCA TCGAGGATCT CAAGTTCCAC
ATGTAGTATC ATCAATGCCA TACTACACCA TGGTATTATT AGTTTGTCCA TGTATGAACT TTGAGGGTTA TGATGAGCCA
TGTATAATGC AAAAATGTGT AGTGTGTTTA TCCTACATTA ATGAAATGTC AGTTTCATAT GAAATGCAAT GCAGACAACA
AATCGGATGC TATTAATGCT AATTGAATGC TCGCCCAAGC TGGTTGTGTG TGTGTAAGAG ATTAATATCA CATAATATTC
TCAAATTTAA CATCAATAAT ACACCTACAC AAATCCATAT CCATCAAGTG CTTTGCCA

[show][hide][copy]CDS

>Vigan.04G050800.01
ATGGAAGGTA CCAGCCCAAA CACGTTTACC TTCATCACCA CCACCATCGA CGCTCCAAGT CCAAGCAACC CTGAGATATC
ACCATCTCCT TCTGCTCTTT CAGGACTCGC ACAAACTTAC CCTCCTGGTT TTTCCAGAAA GGTGTTTGCG GAGGTTATCG
GAACGTTTCT GTTGGTGTTC GTGGGAAGTG GTTCTGCGGG TCTCAGTGTT ATTGATGAGA GCAGAGTGTC AAAGCTCGCA
GCTTCGCTTG CTGCAGGACT CATCGTCACA GTGATGATTT ACTCAATTGG ACACATTTCT GGAGCACACA TGAACCCTGC
GGTTTCCCTT GCTTTTGCTG CCGTGAGGCA TTTTCCGTGG CCACAGGTCC CGTTTTACGT AGTAGCTCAA CTCACTGGAT
CCATTTCTGC TTCATACACA TTGCGAGAGC TTTTCCAGCC ATCAAAGGAA ATTGGGGGAA CAACACCTGC TGGATCACAT
ATCCAAGCAC TGATCGTGGA AATGGTGACT ACTTTCACCA TGGTGTTCAT TTCCATGGCC GTGGCCACTG ACACAAACGC
TACAGGACAA CTATCAGGAG TAGCAGTAGG TTGTTCTGTT AGCATATCAA GCATTGTTGC CGGACCAATA TCGGGGGGAT
CAATGAACCC AGCAAGGACA TTAGGTCCTG CAATTGCAAC ATCAACCTAC AAGGGACTTT GGGTATATTT TGTTGGACCA
ATTACTGGGG CAGTTTTAGC AGCATGGTCT TACAACGTGA TTAGGGACAC GGAACACCCT GGTTTTCCAT TTTCACTATC
CTCCCTTTCA TTCAAGGTAC GCCAAAGCGT TAGTGGAACC AAAACCGACC AACGAAGCTT GGTTTGA

[show][hide][copy]PROTEIN

>Vigan.04G050800.01
MEGTSPNTFT FITTTIDAPS PSNPEISPSP SALSGLAQTY PPGFSRKVFA EVIGTFLLVF VGSGSAGLSV IDESRVSKLA
ASLAAGLIVT VMIYSIGHIS GAHMNPAVSL AFAAVRHFPW PQVPFYVVAQ LTGSISASYT LRELFQPSKE IGGTTPAGSH
IQALIVEMVT TFTMVFISMA VATDTNATGQ LSGVAVGCSV SISSIVAGPI SGGSMNPART LGPAIATSTY KGLWVYFVGP
ITGAVLAAWS YNVIRDTEHP GFPFSLSSLS FKVRQSVSGT KTDQRSLV*