GBrowse Details

Vigan.04G051700.01

Basic Information:
Name: Vigan.04G051700.01
Multiple alignment
Variant Information
Position: Chr04:4717864..4719863 (+ strand)
Length: 2000
Functional Information:
Description: Similar to 60S ribosomal protein L34. [W9RAA1, Morus notabilis.]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L34Ae (IPR008195)
Ribosomal protein L34e, conserved site (IPR018065)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:81.03,97.33,71.79,57.91,99.01,141.72,108.64,73.14
Arabidopsis thaliana homolog: AT1G26880.1
Automatic updates:
Name: NM_001249902 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305798 (LOC100305798), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:4717864..4717929 (+ strand)
Length: 66
Type: five_prime_UTR
Position: Chr04:4717930..4718008 (+ strand)
Length: 79
Type: CDS
Position: Chr04:4718156..4718235 (+ strand)
Length: 80
Type: CDS
Position: Chr04:4719320..4719429 (+ strand)
Length: 110
Type: CDS
Position: Chr04:4719513..4719606 (+ strand)
Length: 94
Type: CDS
Position: Chr04:4719607..4719863 (+ strand)
Length: 257
Type: three_prime_UTR


>Vigan.04G051700.01
AAAACATCTA CCCACACGTT GTACCCTAGT TTGTGTCCTC TAGGTTTAAC TCCATTACCT ACGAAAATGG TGCAGAGGCT
CACTTATCGC AAGCGCCATA GCTATGCCAC CAAATCAAAT CAGCACCGGA TTGTTAAGAC ACCTGGTGGG AAGTTGGTGT
ACCAGAGCAC TAAGAAGAGG GCTAGTGGAC CCAAGTGTCC TGTCACTGGG AAGAGGATCC AAGGGATCCC CCACTTGAGA
CCTACTGAAT ACAAGAGGTC TAGATTGTCT AGGAACCGCC GGACAGTTAA CCGGGCCTAT GGAGGTGTTT TATCTGGTGG
AGCTGTTAGA GAAAGGATTA TTCGGGCTTT CCTCGTTGAA GAACAGAAAA TTGTGAAAAA GGTATTGAAG ATCCAGAAGG
CAAAAGAAAA GCAGGCCGCT AAGAGTTAAG CTGATTAATA TCTTGTCGTT AAGAATTGTG CTAAAGAATT TTGGCTTTGG
TGTTGATCAT GAATCTGGAA CTTAATTTGA AATTGATTTT ATGATTTTTG TTTCTTTTTG GTAGCTTAAA TCAATGATAT
GAAATTGGTA CTTGGTAGTT TATTGGGAAT TCTATATTTA GTGTAGGATT TCGATTTGAA GGATAGAATA ACTGAAACCA
TTTAAGGTTT TTTGTGTTTA GTAGGTAGTT TAAAACCCTT TAATAA

>Vigan.04G051700.01
ATGGTGCAGA GGCTCACTTA TCGCAAGCGC CATAGCTATG CCACCAAATC AAATCAGCAC CGGATTGTTA AGACACCTGG
TGGGAAGTTG GTGTACCAGA GCACTAAGAA GAGGGCTAGT GGACCCAAGT GTCCTGTCAC TGGGAAGAGG ATCCAAGGGA
TCCCCCACTT GAGACCTACT GAATACAAGA GGTCTAGATT GTCTAGGAAC CGCCGGACAG TTAACCGGGC CTATGGAGGT
GTTTTATCTG GTGGAGCTGT TAGAGAAAGG ATTATTCGGG CTTTCCTCGT TGAAGAACAG AAAATTGTGA AAAAGGTATT
GAAGATCCAG AAGGCAAAAG AAAAGCAGGC CGCTAAGAGT TAA

>Vigan.04G051700.01
MVQRLTYRKR HSYATKSNQH RIVKTPGGKL VYQSTKKRAS GPKCPVTGKR IQGIPHLRPT EYKRSRLSRN RRTVNRAYGG
VLSGGAVRER IIRAFLVEEQ KIVKKVLKIQ KAKEKQAAKS *