GBrowse Details

Vigan.04G051900.01

Basic Information:
Name: Vigan.04G051900.01
Multiple alignment
Variant Information
Position: Chr04:4737931..4740253 (+ strand)
Length: 2323
Functional Information:
Description: Similar to transcription factor bHLH135. [XP_003534454.1, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.19,0.64,1.37,0.03,1.48,4.34,8.55
Automatic updates:
Name: KT031126 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_65 bHLH transcription factor (Glyma18g49320.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001254137 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor bHLH135-like (LOC100784537), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:4737931..4738347 (+ strand)
Length: 417
Type: five_prime_UTR
Position: Chr04:4738348..4738470 (+ strand)
Length: 123
Type: CDS
Position: Chr04:4739779..4739934 (+ strand)
Length: 156
Type: CDS
Position: Chr04:4739935..4740253 (+ strand)
Length: 319
Type: three_prime_UTR


>Vigan.04G051900.01
GTGCTTTCAA TCAATGTTTT CTTGACATCC AACATAGCTG TCTACGTTAT TGTACTCTCT CTATCTATCT GCTGTCCCCA
TGGTCCTCTC TTCCTTCATT ATATCTCTCT CATCACTCTC TCCTCTCACT CAAAACCTCC CTCGTATCCA ACACTCTTCT
CTCCTTCCTC CTACTCCTAT ATATCCCCTT TCCCCTTCTT CCACTAACTC CATGTGTTTT ATTTCCCACT TCCCAAACCA
AAACCATTCA TTCTTTGCTT TCCTTCTGCT TCCATATTAC CAGGTAAAAC TTATCATACA CATACATAAC CCCACACATA
CCTCTGCTTA TATATAGCAG CAAAACTAGC CTAGCTTAGC TTGCACTTTC AACAATTACA CACAAGTACA CCAACCTCCA
CCTAGCAACC TAGTAACATG TCTAGCCGAA GATCCAGACA ACATTCAGGG TCTACAAGGA TCTCCGATGA CCAAATCATC
GAGCTTGTTT CCAAATTGCG CCAACTTGTT CCTGAGATTC GCAGTAGGCG ATCTGACAAG GTTTCAGCGT CGAAGGTCCT
ACAAGAAACC TGCAACTACA TCAGAAGCTT GCACAGAGAG GTGAGTGACT TGAGTGAGCG ACTGTCTCAG TTGTTGACCA
CAATTGATGC TGATAGTGCT GAAGCGGGAA TCATTAGGAG CCTACTTAAT CAATAAGCCA TGAGTGTTAT GATTTTTTCA
TTCAAAGAGT GCTAATTATT ATAAGAGTGT ACTTCATTCT AGGTGTGCTG AGAGAGAGCC TGGGAGCTAT ACTGTACCTC
CCATATGGCA GGTAGGACAT TTCATAACCA GATGTTTTCT CTTTTGCCAA TAAATTTTAA GTGCTTGTAC CAGCTACATA
TATGTATGTG CCTCTTTTTA TGGATGGCCA AAATGTAGCA CTCCTTAAAT TTATTAAACT TCTTACTAGT TATGTACTTT
AATTTATATT GCTTTACTCA CCTAGAACTT AGAAGAAGTC AGATAGTAAG AGATG

>Vigan.04G051900.01
ATGTCTAGCC GAAGATCCAG ACAACATTCA GGGTCTACAA GGATCTCCGA TGACCAAATC ATCGAGCTTG TTTCCAAATT
GCGCCAACTT GTTCCTGAGA TTCGCAGTAG GCGATCTGAC AAGGTTTCAG CGTCGAAGGT CCTACAAGAA ACCTGCAACT
ACATCAGAAG CTTGCACAGA GAGGTGAGTG ACTTGAGTGA GCGACTGTCT CAGTTGTTGA CCACAATTGA TGCTGATAGT
GCTGAAGCGG GAATCATTAG GAGCCTACTT AATCAATAA

>Vigan.04G051900.01
MSSRRSRQHS GSTRISDDQI IELVSKLRQL VPEIRSRRSD KVSASKVLQE TCNYIRSLHR EVSDLSERLS QLLTTIDADS
AEAGIIRSLL NQ*