GBrowse Details

Vigan.04G052000.01

Basic Information:
Name: Vigan.04G052000.01
Multiple alignment
Variant Information
Position: Chr04:4763673..4767544 (+ strand)
Length: 3872
Functional Information:
Description: Similar to Uncharacterized protein. [I1N4C4, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:29.41,25.50,15.20,25.59,6.25,28.81,10.42,25.53
Arabidopsis thaliana homolog: AT3G01210.1
Automatic updates:
Name: NM_001255747 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif-containing protein (LOC100797381), transcript variant 2, mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Name: NM_001371432 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif-containing protein (LOC100797381), transcript variant 1, mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:4763673..4764536 (+ strand)
Length: 864
Type: five_prime_UTR
Position: Chr04:4764537..4764652 (+ strand)
Length: 116
Type: CDS
Position: Chr04:4765186..4765261 (+ strand)
Length: 76
Type: CDS
Position: Chr04:4765657..4765773 (+ strand)
Length: 117
Type: CDS
Position: Chr04:4766822..4767280 (+ strand)
Length: 459
Type: CDS
Position: Chr04:4767281..4767544 (+ strand)
Length: 264
Type: three_prime_UTR


>Vigan.04G052000.01
CGAGAATGCT ACACAAGACA AATGTCAGGC GCGTGAGATT GCACAAATTA TCATTTTCCA TTGCTCTAAT CACAAAACCA
AACAATTCCA CTTTGGATTC ATTATCTGCT GACATTCTCT CTCTCTCTAA ACTTTCCCCT GCTTCAGTTC GCCGACAACA
ACTGTAAGGT AAAACATATA ACCATTTTCA ATCTCTTTCT GGTATTTGGT TTATAGTTTT CTTCAAGTAC TTTTGTTTTC
TCGTATTGAT GTTGTCTTTT TTTCGATTGT TTTGTTTTAG TTTATTGTTC TGTCTCTTTT GTGGATCAAA TCAGTGTTTT
TTTCAATTGC GGTGGTGGTG ATTCCATATC CAGTTTAACA TTATAGAATT TGATTGAGTT GGATTGGTTT CCATTGTTTG
CTTGAGGGTG AAAAAAATTA TGTCTTTTGT TGATGGGCAG TCTTCATTCT CATTTGTGTT TTAAAATAAT AAATAAAACA
ATTGAAATGA TAGTCATGTG ATCTGTGGTA TAGTTCTGCG TTAAAATTGT GGCTGATATC TGTCGAGGAC CACCAAATAT
TTTGAAATTT ACAATCTCTT GATAGATAAT GTATGCTACT GAATTATAGA TAATGTTTTC TATCATTTAG TGTAGTTTTG
CTTATCTTCA TTGTTTGTTC TACCAATGCA TGGCCTTGTT GATGGAGAGA TCAAAGGGAA AGGCAAGCCT GTTCCCACTA
CCAGTTTCTG AAGTTACATC AATTATCCTT ACATCTTTTC CTCTATAAAG TAGTCAGTCA ATTTTTTTTA CTTGGTTTAC
TTTCTGCAGA TTTGTTGAAC CTGCTCCTAC TTTTTCCCTT TTGAGATTGA GTCACTTGAC AAGTATGTAT ACTGACGGTT
ATACTGCTCT AGTTACAAAC TTATCTCCAA GAGCAACAGA GAACGATGTA CACAATTTTT TTGCTTATTG TGGTCTAATT
GAGCATGTTG AAATAATAAG ATCTGATGAC AATGCATCTA CTGCATATGT GACTTATCGG GATGCCTATG CACTTGAAAC
TGCACTATTG CTAAATGGAT CAATGATATT GGACCAATGT ATATTCATTT CACGCTATGA AGCTTACGTA AATGACTATG
ATGATTGGGG TAGTCATGTA TCAAAGCCTG AACACAGTAT TACAATCTCA CAAGATGATC GCATGGATAA GTTTGTTTCT
TCCCCTGGAG AAGCACTAAC TCTGGCTCAG GTGGTTGTCA AAACAATGGT GGCTAAGGGC TATGTGTTGG GAAAAGATGC
ATTTGTCATG GCAAAAGCTT TTGATGAATC TCATAATGTG TCGTCTACAG CATCATCAAA GGTTGCTGAA CTCAGCAATA
AAATTGGCTT GACTGATTCC ATTAATTCAG GCATTGAAAC TTTTAAATCT GTGGATGAGA AGTATCATGT CACAGACTTC
ACCAAATCAG CCGCAACAGT CACAGGGACA ACAGCTATAG TTGTTGCATC AGTTACCGGT AAAGCTGCTG TGGCAGCTGG
AAATGCTATA GCCAACAGTA GGTACTTTGC CAAAGGTGCT CTTTGGGTTT CAGATATGTT GACACGTGCA GCCAAAGCAA
CTGCTGATTT GGGTCAGAGT GAAAAGAAAT GAAACTCCAA ACAAAAACTG CTGCGTTATA TGTTGAGTCC TTGGACACAA
ACAAATAGCA TCATTTGTTT GTTGATACTG TATTATAAGG CACGAACTTG CTTTACATGT GTGGCTACTC ATCTGGTGCA
AATGTTCATA TCAGTAGTTT TTAAGAATCC ATGGTAAGAA GCCACTTATA TATGTGTATC GTTTTACAAA ATATGACAGT
TTTAAATTTT AAGCGCCAAC TTTCATATCA AGGTGCAAAA CTTATATGAA GGGAAT

>Vigan.04G052000.01
ATGTATACTG ACGGTTATAC TGCTCTAGTT ACAAACTTAT CTCCAAGAGC AACAGAGAAC GATGTACACA ATTTTTTTGC
TTATTGTGGT CTAATTGAGC ATGTTGAAAT AATAAGATCT GATGACAATG CATCTACTGC ATATGTGACT TATCGGGATG
CCTATGCACT TGAAACTGCA CTATTGCTAA ATGGATCAAT GATATTGGAC CAATGTATAT TCATTTCACG CTATGAAGCT
TACGTAAATG ACTATGATGA TTGGGGTAGT CATGTATCAA AGCCTGAACA CAGTATTACA ATCTCACAAG ATGATCGCAT
GGATAAGTTT GTTTCTTCCC CTGGAGAAGC ACTAACTCTG GCTCAGGTGG TTGTCAAAAC AATGGTGGCT AAGGGCTATG
TGTTGGGAAA AGATGCATTT GTCATGGCAA AAGCTTTTGA TGAATCTCAT AATGTGTCGT CTACAGCATC ATCAAAGGTT
GCTGAACTCA GCAATAAAAT TGGCTTGACT GATTCCATTA ATTCAGGCAT TGAAACTTTT AAATCTGTGG ATGAGAAGTA
TCATGTCACA GACTTCACCA AATCAGCCGC AACAGTCACA GGGACAACAG CTATAGTTGT TGCATCAGTT ACCGGTAAAG
CTGCTGTGGC AGCTGGAAAT GCTATAGCCA ACAGTAGGTA CTTTGCCAAA GGTGCTCTTT GGGTTTCAGA TATGTTGACA
CGTGCAGCCA AAGCAACTGC TGATTTGGGT CAGAGTGAAA AGAAATGA

>Vigan.04G052000.01
MYTDGYTALV TNLSPRATEN DVHNFFAYCG LIEHVEIIRS DDNASTAYVT YRDAYALETA LLLNGSMILD QCIFISRYEA
YVNDYDDWGS HVSKPEHSIT ISQDDRMDKF VSSPGEALTL AQVVVKTMVA KGYVLGKDAF VMAKAFDESH NVSSTASSKV
AELSNKIGLT DSINSGIETF KSVDEKYHVT DFTKSAATVT GTTAIVVASV TGKAAVAAGN AIANSRYFAK GALWVSDMLT
RAAKATADLG QSEKK*