GBrowse Details

Vigan.04G053500.01

Basic Information:
Name: Vigan.04G053500.01
Multiple alignment
Variant Information
Position: Chr04:4893791..4898650 (+ strand)
Length: 4860
Functional Information:
Description: Similar to Vacuolar ATPase subunit d. [B6VAX6, Vigna radiata]
GO: Biological Process: ATP hydrolysis coupled proton transport (GO:0015991)
Cellular Component: proton-transporting V-type ATPase, V0 domain (GO:0033179)
Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078)
InterPro: ATPase, V0 complex, c/d subunit (IPR002843)
ATPase, V0 complex, subunit d (IPR016727)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:88.51,55.63,69.71,59.03,72.31,57.65,74.50,59.16
Arabidopsis thaliana homolog: AT3G28710.1, AT3G28715.1
Automatic updates:
Name: NM_001255868 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max V-type proton ATPase subunit d2-like (LOC100780773), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317281 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata V-type proton ATPase subunit d2 (LOC106759502), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:4893791..4894055 (+ strand)
Length: 265
Type: five_prime_UTR
Position: Chr04:4894056..4894236 (+ strand)
Length: 181
Type: CDS
Position: Chr04:4895026..4895146 (+ strand)
Length: 121
Type: CDS
Position: Chr04:4895371..4895478 (+ strand)
Length: 108
Type: CDS
Position: Chr04:4895567..4895669 (+ strand)
Length: 103
Type: CDS
Position: Chr04:4896085..4896165 (+ strand)
Length: 81
Type: CDS
Position: Chr04:4896268..4896353 (+ strand)
Length: 86
Type: CDS
Position: Chr04:4896442..4896501 (+ strand)
Length: 60
Type: CDS
Position: Chr04:4896610..4896658 (+ strand)
Length: 49
Type: CDS
Position: Chr04:4897291..4897425 (+ strand)
Length: 135
Type: CDS
Position: Chr04:4898180..4898311 (+ strand)
Length: 132
Type: CDS
Position: Chr04:4898312..4898650 (+ strand)
Length: 339
Type: three_prime_UTR


>Vigan.04G053500.01
GGGATTGTTA GTTTGTGACG AATATACATT TTTCACGATC TATTTTCTGT AAAAGTGCGA AACATACTGC ACTGCTCAAA
CCATTAATTT AAGAAATAAA ATAAAGAAAA AGAGGGAATA CGATTTGTGG ATATTTCTCA GAATAATTAT TCATTCATTC
ATCTTGGTGC AGAAATTTCC TGAAGGAGGA GCTTCTCATC CTCTATTTGG TTCCCTTTCC TTCAACCAAT TTGAGATCCG
CGACGCACAT TAGATCCGAT CCGAAATGTA CGGATTCGAA GCTCTCACTT TCAACATCCA TGGCGGCTTT CTCGAGGCTA
TCGTCCGCGG CCACCGCGCT GGTCTCCTCA CTACCGCCGA TTACAACAAC CTCTGCCAAT GCGAAACCCT AGATGACATC
AAGATGCACC TCTCCGCCAC CGAGTACGGC CCTTACCTCC AAAATGAACC TTCTCCACTG CATACCACCA CGATTGTGGA
GAAGTGTACT CTTAAGCTGG TTGATGATTA CAAGAACATG CTATGCCAAG CAACAGAACC CTTGTCCACT TTTTTAGAGT
ATATCACTTA TGGCCACATG ATAGACAATG TTGTTTTGAT TGTTACTGGC ACTTTGCATG AGAGAGATGT TCAAGAATTA
CTAGAAAAAT GCCATCCACT CGGCATGTTT GACAGTATTG CTACTCTGGC TGTTGCTCAG AATATGCGGG AGCTTTACAG
GTTGGTTCTT GTTGACACTC CTCTAGCTCC GTACTTCTCT GAATGCATTA CATCAGAGGA CTTGGATGAT ATGAACATTG
AAATAATGAG GAACACTCTT TACAAGGCAT ATCTTGAAGA CTTCTACAGG TTTTGTCAGA AACTTGGTGG TGCCACAGCT
GAGATAATGT CTGACCTTCT AGCTTTTGAG GCTGATAGAA GGGCTGTGAA TATTACCATA AATAGCATTG GTACTGAACT
AACGAGAGAT GACCGTAGAA AATTGTACTC TAATTTTGGT TTGCTATACC CATATGGTCA TGAGGAACTT GCTATCTGTG
AGGACATTGA TCAGGTTCGT GCTGTCATGG AAAAATACCC CCCCTATCAA TCTATTTTTG CTAAGCTATC ATATGGTGAA
AGTCAGATGC TTGACAAGGC ATTCTATGAG GAGGAGGTGA AAAGGCTTTG CTTGGCGTTT GAACAACAGT TTCATTATGC
TGTGTTCTTC GCATATATGA GGTTAAGGGA ACAGGAGATC AGGAATTTAA TGTGGATTTC AGAATGTGTT GCTCAGAATC
AGAAGTCCAG AGTTCATGAC AGTGTTGTCT TCATATTTTA GTCGGATTGC TCGTTATAGT TTGTATGTTC GTTGGGATAA
TTTGTTGACT TTCTGCATTC GCCATCTGGG TTGTCATTTG TAGACACTAG ACAGCGACCG TTCAGAAGAT TGAGATAAAA
ATAATTAATC TTATGCTGAT AAGATCTTCT GTAATATGGA AGGAAGATAT TTATAGTCGA CTTTGATTGA AATATGTTCA
GTTTTAAAGA TCTTAAGATT CAATTTGTAT GTTGTGAATT TTACAGTAAA TATTTCTATG CAATAAACCT GCTAGCTGGG
TCTATGTATC TCTTTCTTAA TCTCGTTCTT TGTTTCTACT CGAATTTGGC TTAAGCTTAC 

>Vigan.04G053500.01
ATGTACGGAT TCGAAGCTCT CACTTTCAAC ATCCATGGCG GCTTTCTCGA GGCTATCGTC CGCGGCCACC GCGCTGGTCT
CCTCACTACC GCCGATTACA ACAACCTCTG CCAATGCGAA ACCCTAGATG ACATCAAGAT GCACCTCTCC GCCACCGAGT
ACGGCCCTTA CCTCCAAAAT GAACCTTCTC CACTGCATAC CACCACGATT GTGGAGAAGT GTACTCTTAA GCTGGTTGAT
GATTACAAGA ACATGCTATG CCAAGCAACA GAACCCTTGT CCACTTTTTT AGAGTATATC ACTTATGGCC ACATGATAGA
CAATGTTGTT TTGATTGTTA CTGGCACTTT GCATGAGAGA GATGTTCAAG AATTACTAGA AAAATGCCAT CCACTCGGCA
TGTTTGACAG TATTGCTACT CTGGCTGTTG CTCAGAATAT GCGGGAGCTT TACAGGTTGG TTCTTGTTGA CACTCCTCTA
GCTCCGTACT TCTCTGAATG CATTACATCA GAGGACTTGG ATGATATGAA CATTGAAATA ATGAGGAACA CTCTTTACAA
GGCATATCTT GAAGACTTCT ACAGGTTTTG TCAGAAACTT GGTGGTGCCA CAGCTGAGAT AATGTCTGAC CTTCTAGCTT
TTGAGGCTGA TAGAAGGGCT GTGAATATTA CCATAAATAG CATTGGTACT GAACTAACGA GAGATGACCG TAGAAAATTG
TACTCTAATT TTGGTTTGCT ATACCCATAT GGTCATGAGG AACTTGCTAT CTGTGAGGAC ATTGATCAGG TTCGTGCTGT
CATGGAAAAA TACCCCCCCT ATCAATCTAT TTTTGCTAAG CTATCATATG GTGAAAGTCA GATGCTTGAC AAGGCATTCT
ATGAGGAGGA GGTGAAAAGG CTTTGCTTGG CGTTTGAACA ACAGTTTCAT TATGCTGTGT TCTTCGCATA TATGAGGTTA
AGGGAACAGG AGATCAGGAA TTTAATGTGG ATTTCAGAAT GTGTTGCTCA GAATCAGAAG TCCAGAGTTC ATGACAGTGT
TGTCTTCATA TTTTAG

>Vigan.04G053500.01
MYGFEALTFN IHGGFLEAIV RGHRAGLLTT ADYNNLCQCE TLDDIKMHLS ATEYGPYLQN EPSPLHTTTI VEKCTLKLVD
DYKNMLCQAT EPLSTFLEYI TYGHMIDNVV LIVTGTLHER DVQELLEKCH PLGMFDSIAT LAVAQNMREL YRLVLVDTPL
APYFSECITS EDLDDMNIEI MRNTLYKAYL EDFYRFCQKL GGATAEIMSD LLAFEADRRA VNITINSIGT ELTRDDRRKL
YSNFGLLYPY GHEELAICED IDQVRAVMEK YPPYQSIFAK LSYGESQMLD KAFYEEEVKR LCLAFEQQFH YAVFFAYMRL
REQEIRNLMW ISECVAQNQK SRVHDSVVFI F*