GBrowse Details

Vigan.04G054900.01

Basic Information:
Name: Vigan.04G054900.01
Multiple alignment
Variant Information
Position: Chr04:5003357..5013816 (+ strand)
Length: 10460
Functional Information:
Description: Similar to Uncharacterized protein. [I1LXK6, Glycine max]
InterPro: Heat shock protein 70 family (IPR013126)
Heat shock protein 70, conserved site (IPR018181)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.56,50.97,34.74,19.43,57.59,27.48,25.46,42.96
Arabidopsis thaliana homolog: AT4G16660.1
Automatic updates:
Name: NM_001357345 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heat shock 70 kDa protein 17 (LOC100788296), mRNA.
PubMed ID: 27862521 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:5003357..5003519 (+ strand)
Length: 163
Type: five_prime_UTR
Position: Chr04:5003520..5004517 (+ strand)
Length: 998
Type: CDS
Position: Chr04:5007008..5007167 (+ strand)
Length: 160
Type: CDS
Position: Chr04:5008094..5008339 (+ strand)
Length: 246
Type: CDS
Position: Chr04:5008444..5008580 (+ strand)
Length: 137
Type: CDS
Position: Chr04:5008708..5009044 (+ strand)
Length: 337
Type: CDS
Position: Chr04:5009173..5009334 (+ strand)
Length: 162
Type: CDS
Position: Chr04:5010261..5010335 (+ strand)
Length: 75
Type: CDS
Position: Chr04:5010418..5010518 (+ strand)
Length: 101
Type: CDS
Position: Chr04:5010609..5010678 (+ strand)
Length: 70
Type: CDS
Position: Chr04:5011677..5011733 (+ strand)
Length: 57
Type: CDS
Position: Chr04:5011821..5011882 (+ strand)
Length: 62
Type: CDS
Position: Chr04:5013049..5013121 (+ strand)
Length: 73
Type: CDS
Position: Chr04:5013229..5013429 (+ strand)
Length: 201
Type: CDS
Position: Chr04:5013430..5013816 (+ strand)
Length: 387
Type: three_prime_UTR


>Vigan.04G054900.01
GCAAAGCACT CTCTCTGGGA CACCACAACT ATTTACTTCA AATTTATTTA TTTATTATTA CTAATTATTA AACTCAGCTC
TACAATCTCG CTTCTCCCCA ACACATTCAC ATAATTTTCC CTCACTTTCT CGGCGGCAAA ACGCCGCATT CCGTCGGAAA
AACATGGCTT GGAAGGTGGC GCTAACTGTG CTGTTCTCCC TCGCACTCTT GTTCTCTCCG TCGCAATCTG CGGTTTTCAG
CGTAGATCTA GGTTCCGAAT CGTTGAAGGT GGCGGTGGTG AACCTGAAGC CCGGTCAATC TCCGATCTCG ATCGCGATCA
ACGAGATGTC CAAGCGGAAA TCGCCGGCGC TGGTCTCCTT CCACGACGGC CACCGCCTTC TCGGCGAAGA GGCGGCAGGT
CTCGTCGCGC GTTACCCGCA GAAGGTCTAT TCCCAAACGC GCGACCTCCT CGGGAAGCCC TACGCTTCCG CGCAGAGGAT
TCTTAACTCA ATGTACCTCC CTTTCAAGAC GAAGGAAAAT TTCCGAGGCG ACGTGAGTTT TGTCGTGGAC GACGGAAACG
AAAACGATAG CGTTTACTCC CCCGAGGAAC TCGTCGCCAT GGTGTTAGGT TACGCGGCGA ATTTGGCGGA GTTTCACTCG
AAGATTCCAA TTAAGGACGC AGTGATCGCG GTGCCGCCGT ACATGGGACA GGCCGAGCGG AAAGGGCTGC TCGCGGCGGC
ACAGTTGGCG GGGATTAACG TTTTGTCCCT GATAAACGAG CATTCCGGTG CGGCGCTGCA GTATGGGATC GATAAGGACT
TCTCGAACGA GACGAGGCAC GTGATTTTCT ATGACATGGG TGCGACAAGT ACCTACGCGG CGCTTGTGTA CTTCTCGTCG
TACAAGGGTA AGGAGTATGG CAAGAGCGTG TCAGTGAACC AGTTTCAGGT CAAGGATGTG CGCTGGAACG CGGAGCTTGG
TGGTCAGCAC ATGGAGTTGC GATTGGTGGA GTATTTTGCG GATCAGTTCA ACGCGCAAGT TGGTGGTGGG ATCGATGTGA
GGAAGTTTCC CAAGGCCATG GCTAAATTGA AGAAACAGGT TAAACGGACT AAAGAAATTC TTAGTGCGAA TACCGCCGCT
CCTATTTCCG TCGAATCGCT TCATGATGAC GTCGACTTCA GGAGCACTAT AACCCGTGAG AAATTTGAAG AGCTCTGTGA
AGACATTTGG GAAAAATCAC TTTTACCAGT GAAAGAGGTG CTTGAGCATT CTGGCCTTTC ATTGGAACAG ATATATGCAG
TAGAGTTAAT AGGAGGAGCC ACAAGAGTCC CAAAATTACA GGCTAAGCTT CAAGAATTCC TTGGTAGAAA AGAGCTTGAT
AGGCATCTTG ATGCTGATGA AGCAATAGTT CTTGGTGCAG CTCTTCATGC AGCAAATTTA AGTGATGGAA TTAAGTTAAA
CCGTAAACTA GGAATGGTTG ATGGTTCCTT GTATGGATTT GTGGTTGAGT TGAGTGGTCC TGAACTTCTA AAAGATGAAA
GCTCTAGGCA GTTACTTGTA CCACGAATGA AGAAAGTCCC GAGTAAGATG TTTAGGTCCA TTAATCATAA CAAAGATTTT
GAAGTTTCAC TAGCTTATGA AAGTGAGCAT CTTTTGCCTC CTGGTGCTAC CACTCCTGAA ATTGCTCGAT ACCAAATATC
TGGTTTGACA GATGCAAGTG AGAAATACTC ATCTCGGAAT TTGTCATCCC CCATCAAGGC AAGCATACAT TTTTCTCTTA
GTAGAAGTGG AATTCTTTCT CTGGATAAGG CAGATGCTGT TATTGAAATA ACAGAGTGGG TGGAAGTTCC TAAGAAGAAT
TTGACCGTAG AGAATTCAAC CATTTCATCA AATGTTTCGG CTGAATCTGC TGCTGGAAAT AGTTCTGAAG GAAACAATGA
AAGCATCCAA ACTGACCTTG GGAGTAGTAA CACATCCAAC ACTAGCGCAG AGGAGCAAGC TTCCGCGGAG CCTGCTACAG
AGAAGAAACT GAAAAAGCGG ACCTTTAGGG TGCCATTAAA GATTACTGAG AAGATAACTG GACTTGGAAT GTCTCTGTCA
CAAGATTTTC TCACTGAAGC TAAAAGGAAA CTACAAGTAC TAGACCAAAA AGACACAGAC AGAAAAAGAA CAGCCGAGTT
AAAAAATAAT TTAGAAGGAT ATATATACTC TACTAAGGAA AAGATTGAAA CTCTAGAGAA TTTTGAAAAA GTTTCTACAA
GTGAGGAACG CCAGTCCTTC ATTGAGAAGC TTGATCAGGT GCAAGATTGG TTGTATACAG ATGGTGAGGA TGCCAATGCT
GCAGAGTTTC AAGAGCGTCT AGATCAGTTA AAAGCTGTTG GAGATCCAAT TTTCTTAAGG TTAAAAGAGC TTACAGCTCG
ACCAGCAGCA GTTGAGCATG CTCGTAAGTA TATTGATGAG TTGAAACAGA TTGTTGAAGA GTGGAAAGCA AAAAAGCCTT
GGCTTCCGCA AGAACGAGTA GACGAGGTTA TAGAAAGTTC TGAAAAATTA AAGAATTGGT TGGACGAAAA AGAAGATGAG
CAAAAGAAGA CTTCTGGATT CAGTAAGCCA GCATTTACAT CCGAAGAAGT ATATTTAAAG ATGCTCGATC TGCAAAACAA
GGTTGCCAGT ATTAACAGAA TTCCCAAGCC TAAGGTTCAG AAGCCTGAAA AGAATGAAAC AGAGAGCAAT GAACAAAATA
CGGATGATTC CAATTCTACC TCAACGGACA ATTCCTCTTC AAGTGATTCA TCTGCTGACA GTTCAGAAGG GGCAAACGAA
GAAACTGTTA CTGAGCAATC TGAAGGTCAT GATGAGCTAT GATTAACTGG GAATATGCAT GTAAGTCCAG ATTTATTCAT
GTAGCTGAGA GCTTTTATAA TCAAATGTAG AATGGTAATG GTAGAATTAA TAGGTGAAAT GGAGGCAGTG TCAGTTCTCA
GCTAGCAAGA TAATAGAGTT GAGGCAACAT TTGCTTGCTG GTTGAGTGCT AAATTTTTGA GGTTAGATGG GTCCTTGTAG
AAGATGATTA ATTTCCCTTT TATATTTAAG GGGACATATT ATTTACAGCC ATATGCAAAG TTCTATCTGC CGAAACACAA
ATGTTATCGA AGAGAAAAGA CAACACACGA GACTTGATTT GTGCTACGAA CATGATATAC AAATTTTGCT TCAGTTATAA
TTATAAAGTC TCTCTCCTTG CTCACGAAA

>Vigan.04G054900.01
ATGGCTTGGA AGGTGGCGCT AACTGTGCTG TTCTCCCTCG CACTCTTGTT CTCTCCGTCG CAATCTGCGG TTTTCAGCGT
AGATCTAGGT TCCGAATCGT TGAAGGTGGC GGTGGTGAAC CTGAAGCCCG GTCAATCTCC GATCTCGATC GCGATCAACG
AGATGTCCAA GCGGAAATCG CCGGCGCTGG TCTCCTTCCA CGACGGCCAC CGCCTTCTCG GCGAAGAGGC GGCAGGTCTC
GTCGCGCGTT ACCCGCAGAA GGTCTATTCC CAAACGCGCG ACCTCCTCGG GAAGCCCTAC GCTTCCGCGC AGAGGATTCT
TAACTCAATG TACCTCCCTT TCAAGACGAA GGAAAATTTC CGAGGCGACG TGAGTTTTGT CGTGGACGAC GGAAACGAAA
ACGATAGCGT TTACTCCCCC GAGGAACTCG TCGCCATGGT GTTAGGTTAC GCGGCGAATT TGGCGGAGTT TCACTCGAAG
ATTCCAATTA AGGACGCAGT GATCGCGGTG CCGCCGTACA TGGGACAGGC CGAGCGGAAA GGGCTGCTCG CGGCGGCACA
GTTGGCGGGG ATTAACGTTT TGTCCCTGAT AAACGAGCAT TCCGGTGCGG CGCTGCAGTA TGGGATCGAT AAGGACTTCT
CGAACGAGAC GAGGCACGTG ATTTTCTATG ACATGGGTGC GACAAGTACC TACGCGGCGC TTGTGTACTT CTCGTCGTAC
AAGGGTAAGG AGTATGGCAA GAGCGTGTCA GTGAACCAGT TTCAGGTCAA GGATGTGCGC TGGAACGCGG AGCTTGGTGG
TCAGCACATG GAGTTGCGAT TGGTGGAGTA TTTTGCGGAT CAGTTCAACG CGCAAGTTGG TGGTGGGATC GATGTGAGGA
AGTTTCCCAA GGCCATGGCT AAATTGAAGA AACAGGTTAA ACGGACTAAA GAAATTCTTA GTGCGAATAC CGCCGCTCCT
ATTTCCGTCG AATCGCTTCA TGATGACGTC GACTTCAGGA GCACTATAAC CCGTGAGAAA TTTGAAGAGC TCTGTGAAGA
CATTTGGGAA AAATCACTTT TACCAGTGAA AGAGGTGCTT GAGCATTCTG GCCTTTCATT GGAACAGATA TATGCAGTAG
AGTTAATAGG AGGAGCCACA AGAGTCCCAA AATTACAGGC TAAGCTTCAA GAATTCCTTG GTAGAAAAGA GCTTGATAGG
CATCTTGATG CTGATGAAGC AATAGTTCTT GGTGCAGCTC TTCATGCAGC AAATTTAAGT GATGGAATTA AGTTAAACCG
TAAACTAGGA ATGGTTGATG GTTCCTTGTA TGGATTTGTG GTTGAGTTGA GTGGTCCTGA ACTTCTAAAA GATGAAAGCT
CTAGGCAGTT ACTTGTACCA CGAATGAAGA AAGTCCCGAG TAAGATGTTT AGGTCCATTA ATCATAACAA AGATTTTGAA
GTTTCACTAG CTTATGAAAG TGAGCATCTT TTGCCTCCTG GTGCTACCAC TCCTGAAATT GCTCGATACC AAATATCTGG
TTTGACAGAT GCAAGTGAGA AATACTCATC TCGGAATTTG TCATCCCCCA TCAAGGCAAG CATACATTTT TCTCTTAGTA
GAAGTGGAAT TCTTTCTCTG GATAAGGCAG ATGCTGTTAT TGAAATAACA GAGTGGGTGG AAGTTCCTAA GAAGAATTTG
ACCGTAGAGA ATTCAACCAT TTCATCAAAT GTTTCGGCTG AATCTGCTGC TGGAAATAGT TCTGAAGGAA ACAATGAAAG
CATCCAAACT GACCTTGGGA GTAGTAACAC ATCCAACACT AGCGCAGAGG AGCAAGCTTC CGCGGAGCCT GCTACAGAGA
AGAAACTGAA AAAGCGGACC TTTAGGGTGC CATTAAAGAT TACTGAGAAG ATAACTGGAC TTGGAATGTC TCTGTCACAA
GATTTTCTCA CTGAAGCTAA AAGGAAACTA CAAGTACTAG ACCAAAAAGA CACAGACAGA AAAAGAACAG CCGAGTTAAA
AAATAATTTA GAAGGATATA TATACTCTAC TAAGGAAAAG ATTGAAACTC TAGAGAATTT TGAAAAAGTT TCTACAAGTG
AGGAACGCCA GTCCTTCATT GAGAAGCTTG ATCAGGTGCA AGATTGGTTG TATACAGATG GTGAGGATGC CAATGCTGCA
GAGTTTCAAG AGCGTCTAGA TCAGTTAAAA GCTGTTGGAG ATCCAATTTT CTTAAGGTTA AAAGAGCTTA CAGCTCGACC
AGCAGCAGTT GAGCATGCTC GTAAGTATAT TGATGAGTTG AAACAGATTG TTGAAGAGTG GAAAGCAAAA AAGCCTTGGC
TTCCGCAAGA ACGAGTAGAC GAGGTTATAG AAAGTTCTGA AAAATTAAAG AATTGGTTGG ACGAAAAAGA AGATGAGCAA
AAGAAGACTT CTGGATTCAG TAAGCCAGCA TTTACATCCG AAGAAGTATA TTTAAAGATG CTCGATCTGC AAAACAAGGT
TGCCAGTATT AACAGAATTC CCAAGCCTAA GGTTCAGAAG CCTGAAAAGA ATGAAACAGA GAGCAATGAA CAAAATACGG
ATGATTCCAA TTCTACCTCA ACGGACAATT CCTCTTCAAG TGATTCATCT GCTGACAGTT CAGAAGGGGC AAACGAAGAA
ACTGTTACTG AGCAATCTGA AGGTCATGAT GAGCTATGA

>Vigan.04G054900.01
MAWKVALTVL FSLALLFSPS QSAVFSVDLG SESLKVAVVN LKPGQSPISI AINEMSKRKS PALVSFHDGH RLLGEEAAGL
VARYPQKVYS QTRDLLGKPY ASAQRILNSM YLPFKTKENF RGDVSFVVDD GNENDSVYSP EELVAMVLGY AANLAEFHSK
IPIKDAVIAV PPYMGQAERK GLLAAAQLAG INVLSLINEH SGAALQYGID KDFSNETRHV IFYDMGATST YAALVYFSSY
KGKEYGKSVS VNQFQVKDVR WNAELGGQHM ELRLVEYFAD QFNAQVGGGI DVRKFPKAMA KLKKQVKRTK EILSANTAAP
ISVESLHDDV DFRSTITREK FEELCEDIWE KSLLPVKEVL EHSGLSLEQI YAVELIGGAT RVPKLQAKLQ EFLGRKELDR
HLDADEAIVL GAALHAANLS DGIKLNRKLG MVDGSLYGFV VELSGPELLK DESSRQLLVP RMKKVPSKMF RSINHNKDFE
VSLAYESEHL LPPGATTPEI ARYQISGLTD ASEKYSSRNL SSPIKASIHF SLSRSGILSL DKADAVIEIT EWVEVPKKNL
TVENSTISSN VSAESAAGNS SEGNNESIQT DLGSSNTSNT SAEEQASAEP ATEKKLKKRT FRVPLKITEK ITGLGMSLSQ
DFLTEAKRKL QVLDQKDTDR KRTAELKNNL EGYIYSTKEK IETLENFEKV STSEERQSFI EKLDQVQDWL YTDGEDANAA
EFQERLDQLK AVGDPIFLRL KELTARPAAV EHARKYIDEL KQIVEEWKAK KPWLPQERVD EVIESSEKLK NWLDEKEDEQ
KKTSGFSKPA FTSEEVYLKM LDLQNKVASI NRIPKPKVQK PEKNETESNE QNTDDSNSTS TDNSSSSDSS ADSSEGANEE
TVTEQSEGHD EL*