GBrowse Details

Vigan.04G058900.01

Basic Information:
Name: Vigan.04G058900.01
Multiple alignment
Variant Information
Position: Chr04:5578712..5583650 (+ strand)
Length: 4939
Functional Information:
Description: Similar to Uncharacterized protein. [I1N466, Glycine max]
InterPro: Hyaluronan/mRNA-binding protein (IPR006861)
Stm1, N-terminal (IPR019084)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:43.25,73.87,71.92,66.45,110.38,186.70,78.81,75.48
Automatic updates:
Name: NM_001254586 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100807657 (LOC100807657), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:5578712..5579025 (+ strand)
Length: 314
Type: five_prime_UTR
Position: Chr04:5579026..5579212 (+ strand)
Length: 187
Type: CDS
Position: Chr04:5580202..5580520 (+ strand)
Length: 319
Type: CDS
Position: Chr04:5580597..5580662 (+ strand)
Length: 66
Type: CDS
Position: Chr04:5580786..5580918 (+ strand)
Length: 133
Type: CDS
Position: Chr04:5581341..5581496 (+ strand)
Length: 156
Type: CDS
Position: Chr04:5581592..5581648 (+ strand)
Length: 57
Type: CDS
Position: Chr04:5582752..5582931 (+ strand)
Length: 180
Type: CDS
Position: Chr04:5582932..5583650 (+ strand)
Length: 719
Type: three_prime_UTR


>Vigan.04G058900.01
GAGCAGATAC ATAAATTCCT ATTCCTAGGT CTGAAATAAA TAAGAGACTT TGAAGAGATT AGGTTGTGCT GTCTATTCTA
TTCTATTCTC TCACACTCTC ATTCGCACAC TCTCATTCTC TCTCTCTTTG CGGCTAGGGT TTTAGGTCTT TACCCTCGCA
TTTCCTTCAA TCGTCTTCTT CTCTTTGATC TCCCATACGT TTCAGTTTTG TTCAAAATGG AAACTTTGCT AGTTTAAAAC
CAAGTAGTGG TCGAGGCTTT GTGTTTGGGA ACGTACAGTC TTGTTTTGGG ATTGGGAAAA ACAGATTCTG AGAGATGGCA
ACCATGAACC CCTTTGATTT GTTGGGTGAC GACGCAGAGG ACCCTTCTCA GCTCATCGCG GCCGAGCAAC TCAAGGCGGC
GGCAGCGGCT GCGGCGGCCG CGGCGGCTCC GAAGAAGGCG CCTGTTCAGC AGAACAAGCC GGCTCAGCTG CCCACTAAGC
CTCCTCCTCC TGCTCAAGCG GTTAGGGAGT CCAGAAATGA TCCTGTTCGT GGAGGCCGTG GAGGTGGACG AGGTGGTGGA
CGTGGGTTTG GACGTGGTCG TGGGTTTGGT AGGGACTCTT CCAATGATGA GAATTCGTTT CCTGGCACTG GAGCTCCTTA
CAATTCGGGT TCTTTTGAAG AAGGAGATGC TGGGAAGTCT TCTGAAAGAC GTGGTTATGG TGGACCACGA GGTCCTTATC
GTGGTGGGCG CCGTGGAGGT TTTAGCAATG GTGAAACTGG TGAAGGTGAA GAAGGACGCC CTCGACGAGC ATTTGATCGT
CGCAGTGGGA CGGGCCGAGG AAATGAATTT AAACGTGAAG GTGCTGGACG TGGTAACTGG GGAACGCAAA ATGATGATAT
TACCCAGGAA ACTGAGGAAG TTGTGAATGA AACTGAAAAG AATTTGGGAG ATGAGAAGCC TGCAGTTGAA GTAGAAGTAG
CTGATGGAAA CAAGGACAAT CCTGCTAATG ACACTGAAGA GAAAGAGCCT GAAGATAAGG AGATGACTCT GGAGGAATAC
GAGAAAGTGC TGGAAGAGAG AAGGAAGGCC TTCCAAGCAC TCAAGACTGA AGGAAGAAAG GTGGACACTA AAGAGTTTGC
ATCCATGCAA CCCTTGTCAA GCAAAAAGGA CAATCATGAC ATATTCATTA AACTGGGATC TGATAAAGAT AAGCGAAAGG
AGGCTTTTGA GAAGGAAGAA AAATCCAAAA AGTCTGTTAG CATCACCGAA TTCCTGAAGC CTGCTGAAGG GGAAACTTAC
TACAGCCCAG GTGGACGTGG TAGGGGCCGT GGTCGTGGCT CTCGTGGTGG TTTTCGTGGA GGTGTTACCA ACAGTGCACC
TGCCCCATCC ATTGAAGATC CTGGGCATTT CCCAACCTTG GGTGGCAAGT GAGGTTTCCC AGAACCCTTT TGACATATCC
TTGTCATATT TTCAGTTTTG GGTTCTCATT TGAACTTATG CAGGAAAAGA ACTACGGTTA TTGGATTTCC TGGTTCAGAA
GGGTCATTTA ATTATGTCTT AACATGTAAA TTTAGGTTGT TCTTCATACG GTCCTGTATC CCTTGTAGCC TGTTTCCCCA
TATGCTTTGC TTTTGTCTGC GTTTGACATA TTGGGGTATA TGGTGGGGGG AAGGTGGTAA GAGACATAAG TGTTGTTGAG
TTTCCTTTTC TTCATAGATA GACAACTCAG TTTTGCTTCA GATTTTGGTT TCTTATCTTC AATCCCAGTC AAACAAGAAT
AAGTTGGAAC ATAAGTTGAA GACGTCCTTG GTTATTTTTT TTTTGTACCA GGGCTCTTTC TCTGCCTGGT GCCAGTGCTT
AGCACTACCT AAATTTCTCT AGATAGCGTT ACATAATGAG TTAGATCATA ATTGGACTAT TCTATTCGGT GATCTTTGGG
TAGAATGTTA CATTTTGTAA TCTGTGTGCT ACTTTCTTAA ATTCACTTTA AACAAACAAC CCAACCCAAC ATTTTAAGAA
CTCACGCTTC ACATCACTCT TAACCATTAT TTTTATACCG ATAATTTGAA CTGATTACAT CTTAAAATTT CTCTTCCATT
ACGGGTTAGT TTAATGTAAT GATGATTTAT ATTCGTAATT TTAAACTATA T

>Vigan.04G058900.01
ATGGCAACCA TGAACCCCTT TGATTTGTTG GGTGACGACG CAGAGGACCC TTCTCAGCTC ATCGCGGCCG AGCAACTCAA
GGCGGCGGCA GCGGCTGCGG CGGCCGCGGC GGCTCCGAAG AAGGCGCCTG TTCAGCAGAA CAAGCCGGCT CAGCTGCCCA
CTAAGCCTCC TCCTCCTGCT CAAGCGGTTA GGGAGTCCAG AAATGATCCT GTTCGTGGAG GCCGTGGAGG TGGACGAGGT
GGTGGACGTG GGTTTGGACG TGGTCGTGGG TTTGGTAGGG ACTCTTCCAA TGATGAGAAT TCGTTTCCTG GCACTGGAGC
TCCTTACAAT TCGGGTTCTT TTGAAGAAGG AGATGCTGGG AAGTCTTCTG AAAGACGTGG TTATGGTGGA CCACGAGGTC
CTTATCGTGG TGGGCGCCGT GGAGGTTTTA GCAATGGTGA AACTGGTGAA GGTGAAGAAG GACGCCCTCG ACGAGCATTT
GATCGTCGCA GTGGGACGGG CCGAGGAAAT GAATTTAAAC GTGAAGGTGC TGGACGTGGT AACTGGGGAA CGCAAAATGA
TGATATTACC CAGGAAACTG AGGAAGTTGT GAATGAAACT GAAAAGAATT TGGGAGATGA GAAGCCTGCA GTTGAAGTAG
AAGTAGCTGA TGGAAACAAG GACAATCCTG CTAATGACAC TGAAGAGAAA GAGCCTGAAG ATAAGGAGAT GACTCTGGAG
GAATACGAGA AAGTGCTGGA AGAGAGAAGG AAGGCCTTCC AAGCACTCAA GACTGAAGGA AGAAAGGTGG ACACTAAAGA
GTTTGCATCC ATGCAACCCT TGTCAAGCAA AAAGGACAAT CATGACATAT TCATTAAACT GGGATCTGAT AAAGATAAGC
GAAAGGAGGC TTTTGAGAAG GAAGAAAAAT CCAAAAAGTC TGTTAGCATC ACCGAATTCC TGAAGCCTGC TGAAGGGGAA
ACTTACTACA GCCCAGGTGG ACGTGGTAGG GGCCGTGGTC GTGGCTCTCG TGGTGGTTTT CGTGGAGGTG TTACCAACAG
TGCACCTGCC CCATCCATTG AAGATCCTGG GCATTTCCCA ACCTTGGGTG GCAAGTGA

>Vigan.04G058900.01
MATMNPFDLL GDDAEDPSQL IAAEQLKAAA AAAAAAAAPK KAPVQQNKPA QLPTKPPPPA QAVRESRNDP VRGGRGGGRG
GGRGFGRGRG FGRDSSNDEN SFPGTGAPYN SGSFEEGDAG KSSERRGYGG PRGPYRGGRR GGFSNGETGE GEEGRPRRAF
DRRSGTGRGN EFKREGAGRG NWGTQNDDIT QETEEVVNET EKNLGDEKPA VEVEVADGNK DNPANDTEEK EPEDKEMTLE
EYEKVLEERR KAFQALKTEG RKVDTKEFAS MQPLSSKKDN HDIFIKLGSD KDKRKEAFEK EEKSKKSVSI TEFLKPAEGE
TYYSPGGRGR GRGRGSRGGF RGGVTNSAPA PSIEDPGHFP TLGGK*