GBrowse Details

Vigan.04G061600.01

Basic Information:
Name: Vigan.04G061600.01
Multiple alignment
Variant Information
Position: Chr04:5853747..5859063 (+ strand)
Length: 5317
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase, cyclophilin type. [A2Q1W0, Medicago truncatula]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.64,1.68,5.32,5.02,3.01,7.53,4.48,4.66
Automatic updates:
Name: NM_001357158 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase CYP30 (CYP30), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:5853747..5854193 (+ strand)
Length: 447
Type: five_prime_UTR
Position: Chr04:5854194..5854553 (+ strand)
Length: 360
Type: CDS
Position: Chr04:5855210..5855308 (+ strand)
Length: 99
Type: CDS
Position: Chr04:5855990..5856034 (+ strand)
Length: 45
Type: CDS
Position: Chr04:5857479..5857616 (+ strand)
Length: 138
Type: CDS
Position: Chr04:5858197..5858529 (+ strand)
Length: 333
Type: CDS
Position: Chr04:5858530..5859063 (+ strand)
Length: 534
Type: three_prime_UTR


>Vigan.04G061600.01
TGGCAATAAA AACTATTTTA GTGGTATTAT AAAAAATTAT TATTAGCGAA GCAATGCGTC ATCATTCCCT GGGTGGAAAG
TAGGTTGTTG TCAAAGGTTG TACAGTAATC TTGTTTTGCA TGGACATTGC AGGCACGCAA TGTGAGGTGA AAATAGTGAC
AAGAGTCAGA AGACAAAACT GAGTGTATAA ATCACAAAGA AAGGAAAAGG AAAAAGAAGG AAAAGAGGTA AAGATAGATT
GATGAGAAAT AACATGTGGT TTTTATTTGC GGTGGAAGCA TCACCTTTCT GTTTGTTTCA GCTTCATAAT GAAAAAGCCG
CCAACGATCT TGTCCTCTTT GCTGTTGTTG ATGTTCACGT TTCCTCTGTT CTCCATCCCC CAAACGTAGA AAAAAGGAAA
AGCCAAGAAC GAAGTCACCC CTTTGCAATT TCTCTGCATT CTGGAAAATG GGTCGTCGCC AAAACGATTC AGATTTTGGT
AGGTTCGCTC TTTTCGCCCT CTTCTTGATT GGCACAATCT CCTGCTCCGC GGTGTACCTT TTCCTTTCCG TGATCTTGAG
ACCCAACAGT GAATCTCTGC CTTCGGCGGA AGATGAGGGT CCAAAAGAAG AGCAATGTTG CAGAGGGGTT GAGAATTTGG
AGCTTTGGGG TGAGGCTGTC AAATGGGGTT CTGAATTTGT TTTGAATTCC TCCGAAGAAT GTTGCATGGC GTGTAAGAGA
ATGTGTAACG GTGAGGGAGG GCCCTGTTTG TGTAATTCCT GGGTTTATTG TGGAGATAGA GAGGCGTGTG GACCTAGATT
TGGTGAGTGT TGGTTAAAAA AGCAACAGGA TGCTTTAAAT CCCGATCGAC GAGACTCGGG AGATCTTGTA ATGTGGACTT
CTGGGTTGGT CTTTCGTAAG GGAGAGGAAA TCGTTGGTAT GGAAACGGAC CATGGAATTC TTCGTATAAA ACTTTTACCC
GAATGCGCAC CAAATTCTGT CTTCTACATT CTTGAGCTCT TGGCACTGCC TCACTGTATT GGTTGTCAGA TTCATAGAGC
TGAAAGCCGA GGAAGCTTTT GGGATTCAAA AGGAAATCAC ATAAAAAGGA CTCCATATGG TCCTCCTTTT GCACTTATTC
AAGGAACATT GGAATCCCAT GGGTCTATTT TCAAGGATAT TCCAAAAGAG TACTGCCCTA CCGTAAGAAG AGGATCTGTA
GCATGGGTTG GTTCTGGTCC AGAATTCTTC ATCAGCCTTG CGGATCACGA GGAATGGAGA AATCCATACA CCGTTTTTGG
CTATGTTCTA TCTGAGGATA TGGAAGTCTT AGAGAAAATT TCTCAGCTTC CAACTAAATC TGAAATCTGG AATAGCATTA
AGATCTCTAT CTTGGAGAAC CCAGTTTCAT TACGTTTTCG AAGAATGAAC ACAAAGTCTT GAATCCTCAG TTTCATTGAT
TTGTTCTTTC AAAATTTTCC TTATTTGTTA AGTGATAAGG GGTTCAATAT GGATCTTGGG CTCAAGTTGC TTTCAGCCAT
TCTAGCTGAT TGCAAATCAA ATAGAGTAGA GTGAGTGAGT ATACAAGTTT TATAGGTATG TCTGTGGATA TTTCGTGCTT
CTGTTATTTC ATATTTCCTT GCACATAACA TAGTGTTGAA GAAAGGGCAG CATCATTCTC ATCATCGTAG ACAACAAAAG
CATACTGGAA ATGGGATTAT GTCCCAAGAT ACTAGCTGAT GACACCCATT TGCAGGCATT ATTGTGTGCT ACAAAATTAG
TGAACATTTC TTCATTCACC ATCAGATTAG GTGGACCCAT AGAACAGAAT AATTGACTCA TTGTATTGAA GTTTGTGCCT
TGCACTTCTT GCCTTTCATC ACACAAAAAT ATTTTTTGAA GTTTTAGTAT TTTCTCTTGT TAGGTAATAT TTTGTACATT
TCTGGAAGGA ACTTCAATTT TTGACATATC AACGTG

>Vigan.04G061600.01
ATGGGTCGTC GCCAAAACGA TTCAGATTTT GGTAGGTTCG CTCTTTTCGC CCTCTTCTTG ATTGGCACAA TCTCCTGCTC
CGCGGTGTAC CTTTTCCTTT CCGTGATCTT GAGACCCAAC AGTGAATCTC TGCCTTCGGC GGAAGATGAG GGTCCAAAAG
AAGAGCAATG TTGCAGAGGG GTTGAGAATT TGGAGCTTTG GGGTGAGGCT GTCAAATGGG GTTCTGAATT TGTTTTGAAT
TCCTCCGAAG AATGTTGCAT GGCGTGTAAG AGAATGTGTA ACGGTGAGGG AGGGCCCTGT TTGTGTAATT CCTGGGTTTA
TTGTGGAGAT AGAGAGGCGT GTGGACCTAG ATTTGGTGAG TGTTGGTTAA AAAAGCAACA GGATGCTTTA AATCCCGATC
GACGAGACTC GGGAGATCTT GTAATGTGGA CTTCTGGGTT GGTCTTTCGT AAGGGAGAGG AAATCGTTGG TATGGAAACG
GACCATGGAA TTCTTCGTAT AAAACTTTTA CCCGAATGCG CACCAAATTC TGTCTTCTAC ATTCTTGAGC TCTTGGCACT
GCCTCACTGT ATTGGTTGTC AGATTCATAG AGCTGAAAGC CGAGGAAGCT TTTGGGATTC AAAAGGAAAT CACATAAAAA
GGACTCCATA TGGTCCTCCT TTTGCACTTA TTCAAGGAAC ATTGGAATCC CATGGGTCTA TTTTCAAGGA TATTCCAAAA
GAGTACTGCC CTACCGTAAG AAGAGGATCT GTAGCATGGG TTGGTTCTGG TCCAGAATTC TTCATCAGCC TTGCGGATCA
CGAGGAATGG AGAAATCCAT ACACCGTTTT TGGCTATGTT CTATCTGAGG ATATGGAAGT CTTAGAGAAA ATTTCTCAGC
TTCCAACTAA ATCTGAAATC TGGAATAGCA TTAAGATCTC TATCTTGGAG AACCCAGTTT CATTACGTTT TCGAAGAATG
AACACAAAGT CTTGA

>Vigan.04G061600.01
MGRRQNDSDF GRFALFALFL IGTISCSAVY LFLSVILRPN SESLPSAEDE GPKEEQCCRG VENLELWGEA VKWGSEFVLN
SSEECCMACK RMCNGEGGPC LCNSWVYCGD REACGPRFGE CWLKKQQDAL NPDRRDSGDL VMWTSGLVFR KGEEIVGMET
DHGILRIKLL PECAPNSVFY ILELLALPHC IGCQIHRAES RGSFWDSKGN HIKRTPYGPP FALIQGTLES HGSIFKDIPK
EYCPTVRRGS VAWVGSGPEF FISLADHEEW RNPYTVFGYV LSEDMEVLEK ISQLPTKSEI WNSIKISILE NPVSLRFRRM
NTKS*