GBrowse Details

Vigan.04G063900.01

Basic Information:
Name: Vigan.04G063900.01
Multiple alignment
Variant Information
Position: Chr04:6038115..6041183 (- strand)
Length: 3069
Functional Information:
Description: Similar to Uncharacterized protein. [I1KHZ8, Glycine max]
GO: Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089)
Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: chloroplast (GO:0009507)
Molecular Function: 4-hydroxy-tetrahydrodipicolinate reductase (GO:0008839)
Molecular Function: NADPH binding (GO:0070402)
InterPro: Dihydrodipicolinate reductase, N-terminal (IPR000846)
Dihydrodipicolinate reductase, bacterial/plant (IPR011770)
Dihydrodipicolinate reductase, plant (IPR011859)
NAD(P)-binding domain (IPR016040)
Dihydrodipicolinate reductase, C-terminal (IPR022663)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.25,17.33,28.86,27.23,27.84,31.48,21.10,19.39
Arabidopsis thaliana homolog: AT3G59890.1
Automatic updates:
Name: NM_001255188 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max dihydrodipicolinate reductase 2, chloroplastic-like (LOC100807997), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:6038115..6038361 (- strand)
Length: 247
Type: three_prime_UTR
Position: Chr04:6038362..6038430 (- strand)
Length: 69
Type: CDS
Position: Chr04:6038540..6038627 (- strand)
Length: 88
Type: CDS
Position: Chr04:6038736..6038845 (- strand)
Length: 110
Type: CDS
Position: Chr04:6039189..6039290 (- strand)
Length: 102
Type: CDS
Position: Chr04:6039800..6039874 (- strand)
Length: 75
Type: CDS
Position: Chr04:6040052..6040185 (- strand)
Length: 134
Type: CDS
Position: Chr04:6040337..6040574 (- strand)
Length: 238
Type: CDS
Position: Chr04:6040763..6040981 (- strand)
Length: 219
Type: CDS
Position: Chr04:6040982..6041183 (- strand)
Length: 202
Type: five_prime_UTR


>Vigan.04G063900.01
TAAAAGTGTG GGGTTGCATG AAGTAAAAGC CTTCTTAACT TCTCAGATGT TTTTATTTTA CTCATCATTC ACCTCCCTCA
ACAATGGTGG ACAAATGAGA AAAACTCTGT AAAACCTAAC CAGGATCGTT TCTCAGAAAG CGCAGGAAAA AGTGAAAACC
TAAATCCCCA AATTGAGCTC AGGTTCTCAC TCTTCGTCTT CAATGGCAAC ATCTTTTCTG AAAACTACAC CCAACGTGTT
CCAAAGACAC CAAAATCCTT TCGCATTCGT CGCCAATAGC ATAAGTGCGA GAACAAGTGT TCCTATTTCT CAAAAGAGGA
GATCTCGTTC TTTCGCTCTA GTGTCGATGT CAGCCACGCC CGTTGAAACT TCTCTAGTAA AGTCTCCACC TTCGTCCCAA
AACACGGGTA TTCCAATAAT GGTTAATGCA TGTACTGGAA AAATGGGAAA GGCCGTGATT AATGCAGGGG AAGCTGCTGG
ACTGAATGTT GTTCCTGTGT CATTTGGGTG TGACGAGGAG TCTGGACAGA CTTTTGAGAT AGGTGGAAAG GAGTTTTTGG
TGCATGGTCC TTCTGACAGG GAGAGTGCTC TTGTATCTGC CCTTGAAAGA TATCCAAATT TGATTGTTGT GGACTATACT
GTACCTAATG CGGTTAATGG CAATGCTGAG CTATACTGTA AGGTTGGAGT GCCCTTCGTG ATTGGAACCA CCGGTGGAGA
TCGGGACTTG TTGCATAAGA CTGTTGAAGA CTCAAAGAAT TATGCAGTGA TATCCCCGCA AATGGGAAAG CAGGTTGTTG
CTTTTCTTGC AGCTATGGAA ATTATGGCAG AGCAATTTCC TGGAGCCTTC TCAGGGTATT CCTTACAGGT ACTGGAGTCC
CATCAAGCAA GCAAAGTTGA TGCATCTGGA ACTGCGAAGG CTGTAATTTC TTGCTTCAAC AAACTGGGGG TGTCTTTTGA
TATGGATCAG ATAAAACTGA TCAGGGATCC CAGGCAACAA CTTGAAATGG TTGGAGTCCC AGAGGAGCAT TTGTCTGGTC
ATGCATTTCA TATGTATCAT TTGACATCAC CAGATGACAC GGTTTCTTTT GAATTCCAAC ATAATGTTTG TGGTAGATCA
ATATATGCAG AAGGCACTGT GGATGCTGTA TTGTTTCTCG CTAAGAAGAT TGAAGCAAAG GACGAGAAGA GATTGTATAA
TATGATTGAT GTCTTGCGAG AGGGTAATAT GCGATGAAAT TTTTTCATTG AATCTGAACC AGGAGTCAGC TGTAGAACTT
ATAATAAACA AGATTTCGCA TGTTGGTTTT TGGGCCAAGC AATTTTCCTG AGTTCGTTTT TGTTAAGCTT ACACAAGGTT
AGTGTATGTA TTATTTATGA ATCGATGAAG ACTATGTAAA GCACTCTTAT GGGATCAATT TCAACATTTT TGTTTCCTTT
TATCATTTCT TTTCTTGAAA TTCATGTCTC ATCTTTGTTG GTCG

>Vigan.04G063900.01
ATGGCAACAT CTTTTCTGAA AACTACACCC AACGTGTTCC AAAGACACCA AAATCCTTTC GCATTCGTCG CCAATAGCAT
AAGTGCGAGA ACAAGTGTTC CTATTTCTCA AAAGAGGAGA TCTCGTTCTT TCGCTCTAGT GTCGATGTCA GCCACGCCCG
TTGAAACTTC TCTAGTAAAG TCTCCACCTT CGTCCCAAAA CACGGGTATT CCAATAATGG TTAATGCATG TACTGGAAAA
ATGGGAAAGG CCGTGATTAA TGCAGGGGAA GCTGCTGGAC TGAATGTTGT TCCTGTGTCA TTTGGGTGTG ACGAGGAGTC
TGGACAGACT TTTGAGATAG GTGGAAAGGA GTTTTTGGTG CATGGTCCTT CTGACAGGGA GAGTGCTCTT GTATCTGCCC
TTGAAAGATA TCCAAATTTG ATTGTTGTGG ACTATACTGT ACCTAATGCG GTTAATGGCA ATGCTGAGCT ATACTGTAAG
GTTGGAGTGC CCTTCGTGAT TGGAACCACC GGTGGAGATC GGGACTTGTT GCATAAGACT GTTGAAGACT CAAAGAATTA
TGCAGTGATA TCCCCGCAAA TGGGAAAGCA GGTTGTTGCT TTTCTTGCAG CTATGGAAAT TATGGCAGAG CAATTTCCTG
GAGCCTTCTC AGGGTATTCC TTACAGGTAC TGGAGTCCCA TCAAGCAAGC AAAGTTGATG CATCTGGAAC TGCGAAGGCT
GTAATTTCTT GCTTCAACAA ACTGGGGGTG TCTTTTGATA TGGATCAGAT AAAACTGATC AGGGATCCCA GGCAACAACT
TGAAATGGTT GGAGTCCCAG AGGAGCATTT GTCTGGTCAT GCATTTCATA TGTATCATTT GACATCACCA GATGACACGG
TTTCTTTTGA ATTCCAACAT AATGTTTGTG GTAGATCAAT ATATGCAGAA GGCACTGTGG ATGCTGTATT GTTTCTCGCT
AAGAAGATTG AAGCAAAGGA CGAGAAGAGA TTGTATAATA TGATTGATGT CTTGCGAGAG GGTAATATGC GATGA

>Vigan.04G063900.01
MATSFLKTTP NVFQRHQNPF AFVANSISAR TSVPISQKRR SRSFALVSMS ATPVETSLVK SPPSSQNTGI PIMVNACTGK
MGKAVINAGE AAGLNVVPVS FGCDEESGQT FEIGGKEFLV HGPSDRESAL VSALERYPNL IVVDYTVPNA VNGNAELYCK
VGVPFVIGTT GGDRDLLHKT VEDSKNYAVI SPQMGKQVVA FLAAMEIMAE QFPGAFSGYS LQVLESHQAS KVDASGTAKA
VISCFNKLGV SFDMDQIKLI RDPRQQLEMV GVPEEHLSGH AFHMYHLTSP DDTVSFEFQH NVCGRSIYAE GTVDAVLFLA
KKIEAKDEKR LYNMIDVLRE GNMR*