GBrowse Details

Vigan.04G064500.01

Basic Information:
Name: Vigan.04G064500.01
Multiple alignment
Variant Information
Position: Chr04:6074234..6076527 (- strand)
Length: 2294
Functional Information:
Description: Similar to Cytochrome c. [P00052, Vigna radiata var. radiata]
GO: Molecular Function: iron ion binding (GO:0005506)
Molecular Function: electron carrier activity (GO:0009055)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome c, class IA/ IB (IPR002327)
Cytochrome c domain (IPR003088)
Cytochrome c-like domain (IPR009056)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:143.01,92.60,101.73,55.40,184.73,111.59,127.50,69.01
Arabidopsis thaliana homolog: AT1G22840.1
Automatic updates:
Name: NM_001248702 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500015 (LOC100500015), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254026 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome c-like (LOC100817799), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:6074234..6074835 (- strand)
Length: 602
Type: three_prime_UTR
Position: Chr04:6074836..6074928 (- strand)
Length: 93
Type: CDS
Position: Chr04:6075349..6075482 (- strand)
Length: 134
Type: CDS
Position: Chr04:6076257..6076368 (- strand)
Length: 112
Type: CDS
Position: Chr04:6076369..6076527 (- strand)
Length: 159
Type: five_prime_UTR


>Vigan.04G064500.01
AAGTGCCAGG TTGTTTCCAA CGTGAGGGGT TTTAAAAAGA TTTTATGTGA CCGCCTTGTG GTGTAGCGTG TGGTGCTATC
GTCTCATTTC AGCTTCATTT CGTTTCATTT GCATTTCATT TGACGTTTTC TTTCTGGAAG CTTCGGCACG CAGAGATCCA
TGGCGTCGTT CGATGAAGCT CCTCCCGGAA ACTCCAAGAG CGGCGAGAAG ATCTTCAAGA CTAAGTGCGC TCAGTGTCAC
ACCGTCGATA AAGGTGCCGG TCACAAACAA GGACCCAATC TGAATGGTTT GTTTGGAAGG CAATCTGGCA CAACCGCTGG
ATATTCCTAT TCTACCGCTA ACAAAAACAT GGCTGTGATT TGGGAGGAAA AGACCTTGTA TGATTACTTG CTCAATCCCA
AAAAGTATAT TCCAGGGACG AAGATGGTGT TTCCCGGTCT TAAGAAACCT CAGGATCGTG CGGATCTTAT TGCTTATCTT
AAAGAATCCA CTGCATAAGG ATTAAACTTT CATACATACA GTTACGCATT GTTCATTCGA AGTTCCGGAG ATTTAAATTT
TCAGACATTT AATTATGTGG TACAGGAAGT ACTGTATCAA CAAATAAAGT AGACCTGATT TGTTTGCAAT GCTATTTTGT
TCATTTTGCA TTGCTTTTTA AGAATTTGCA ATATATGGGT TAATACCCAA TTAATTTAGC AGTTGAAAGT TGAAACATTG
TTGCTGATAT TTAATTTGCT AGAAGGACAA TTTGGTCTAC CTTAGTTGCA CAAGTGTTTT TTCAAGTCGT ATAATTTATG
TAGTTTGCTT AGCTGAATGA AATGCATACT TTAACTACAA TGATCTAGGT CATGATATGC CAAAGGAGAG TGTTGGCCCA
ATCTTGAGCT GGAGTGGTAT GGTGAGAGAT TTTGTTCCAT TGTCAGTTAG CCCTGGATAA ATTTGAGCCG AACAATTCTT
GCATTTTATT GTTTAGTTTC AATGATGAAA TCGGTCAGTT GGCTTTAGTT TATTTGCTAC ATGTCTTCTA GTCATTTTAT
GGAGTTGGTT GATGGGTGAA TTTAATTTAG GTTAAGTTTT AAGGACTTTA TTTAAATGTA 

>Vigan.04G064500.01
ATGGCGTCGT TCGATGAAGC TCCTCCCGGA AACTCCAAGA GCGGCGAGAA GATCTTCAAG ACTAAGTGCG CTCAGTGTCA
CACCGTCGAT AAAGGTGCCG GTCACAAACA AGGACCCAAT CTGAATGGTT TGTTTGGAAG GCAATCTGGC ACAACCGCTG
GATATTCCTA TTCTACCGCT AACAAAAACA TGGCTGTGAT TTGGGAGGAA AAGACCTTGT ATGATTACTT GCTCAATCCC
AAAAAGTATA TTCCAGGGAC GAAGATGGTG TTTCCCGGTC TTAAGAAACC TCAGGATCGT GCGGATCTTA TTGCTTATCT
TAAAGAATCC ACTGCATAA

>Vigan.04G064500.01
MASFDEAPPG NSKSGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTAGYSYSTA NKNMAVIWEE KTLYDYLLNP
KKYIPGTKMV FPGLKKPQDR ADLIAYLKES TA*