VIGGS:GBrowse

Vigan.04G064900.01

Basic Information:

Name:	Vigan.04G064900.01 Multiple alignment Variant Information
Position:	Chr04:6144043..6148581 (- strand)
Length:	4539

Functional Information:

Description:	Similar to Acyl carrier protein. [V7B2C0, Phaseolus vulgaris]
GO:	Biological Process: fatty acid biosynthetic process (GO:0006633)
InterPro:	Acyl carrier protein (ACP) (IPR003231)
InterPro:	Acyl carrier protein-like (IPR009081)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:41.47,48.57,77.86,37.97,99.90,171.84,101.35,59.98
Arabidopsis thaliana homolog:	AT2G44620.1

Automatic updates:

Name:	NM_001248115 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative acyl carrier protein, mitochondrial (LOC100306438), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:6144043..6144325 (- strand)
Length:	283
Type:	three_prime_UTR

Position:	Chr04:6144326..6144502 (- strand)
Length:	177
Type:	CDS

Position:	Chr04:6148361..6148534 (- strand)
Length:	174
Type:	CDS

Position:	Chr04:6148535..6148581 (- strand)
Length:	47
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G064900.01
AGTCACTTCA CTTGTTGGTA AAAGAAAGGA GAGAGAGAGA GAGAGAAATG GCAGTGAGGG CCGCCGTACT CCGCCACATT
CGTGTGCCAC TCCAAGCCGT TCCAAGACTT CAGCCATGGC GTGCCATGTC ATCACACGGC GACGACCATC TCTCCAAAGA
GGAGGTCATC CAAAGAGTCC TCGCCGTCGT CAAAGATTTC CCCAAAGTCG ATCCTTCCAA GGTGACTCCA GATGTCCATT
TTCAGAAGGA TCTGGGTTTG GATAGCTTGG ACAATGTGGA AATTGTAATG GCTCTGGAAG AGGAGTTCAA GTTAGAGATC
CCAGACAAGG AAGCCGATAA AATTGACTCC TGTAATCTTG CTATTGAGTA TATTGCTAAT CATCCCATGG CTGGTTAACT
AATATGACCT TTTTTCCTAT TTGTCTTCTT GTTGAACTTT TGAGTATCAG TGCAACCTTG AACCCTTTCC TTACTTTCAC
TGGATGTTTA TGGAATCTGG TGTTTGTCAT CTTTTCCTTT TTCTCTTTTG AATTGGAGTG AAGGAACTGG TTGTTTAGAA
TAATGTGAAT TGTTCAGAGA GGAATTTGTC AATGAAAATT GGTACTGGTT TTTTGAAGGA CTACAATTTC TACTGTAAAC
TTTTTTTAGC CATGCTAAAT CTCTGATATT ATTCACTGAG A

[show][hide][copy]CDS

>Vigan.04G064900.01
ATGGCAGTGA GGGCCGCCGT ACTCCGCCAC ATTCGTGTGC CACTCCAAGC CGTTCCAAGA CTTCAGCCAT GGCGTGCCAT
GTCATCACAC GGCGACGACC ATCTCTCCAA AGAGGAGGTC ATCCAAAGAG TCCTCGCCGT CGTCAAAGAT TTCCCCAAAG
TCGATCCTTC CAAGGTGACT CCAGATGTCC ATTTTCAGAA GGATCTGGGT TTGGATAGCT TGGACAATGT GGAAATTGTA
ATGGCTCTGG AAGAGGAGTT CAAGTTAGAG ATCCCAGACA AGGAAGCCGA TAAAATTGAC TCCTGTAATC TTGCTATTGA
GTATATTGCT AATCATCCCA TGGCTGGTTA A

[show][hide][copy]PROTEIN

>Vigan.04G064900.01
MAVRAAVLRH IRVPLQAVPR LQPWRAMSSH GDDHLSKEEV IQRVLAVVKD FPKVDPSKVT PDVHFQKDLG LDSLDNVEIV
MALEEEFKLE IPDKEADKID SCNLAIEYIA NHPMAG*