GBrowse Details

Vigan.04G065600.01

Basic Information:
Name: Vigan.04G065600.01
Multiple alignment
Variant Information
Position: Chr04:6232779..6238403 (- strand)
Length: 5625
Functional Information:
Description: Similar to Uncharacterized protein. [K7MUH9, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: phosphatase activity (GO:0016791)
InterPro: 2-phosphoglycolate phosphatase, eukaryotic (IPR006349)
HAD-superfamily hydrolase, subfamily IIA (IPR006357)
HAD-like domain (IPR023214)
Nitrophenylphosphatase-like domain (IPR023215)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.74,2.58,50.78,531.82,10.39,20.72,6.22,69.34
Arabidopsis thaliana homolog: AT5G36700.1, AT5G36790.1
Automatic updates:
Name: NM_001289391 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phosphoglycolate phosphatase 1B, chloroplastic-like (LOC100820476), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:6232779..6232962 (- strand)
Length: 184
Type: three_prime_UTR
Position: Chr04:6232963..6233173 (- strand)
Length: 211
Type: CDS
Position: Chr04:6233816..6233915 (- strand)
Length: 100
Type: CDS
Position: Chr04:6234187..6234284 (- strand)
Length: 98
Type: CDS
Position: Chr04:6234838..6234890 (- strand)
Length: 53
Type: CDS
Position: Chr04:6234979..6235038 (- strand)
Length: 60
Type: CDS
Position: Chr04:6235425..6235496 (- strand)
Length: 72
Type: CDS
Position: Chr04:6236787..6236858 (- strand)
Length: 72
Type: CDS
Position: Chr04:6236954..6237046 (- strand)
Length: 93
Type: CDS
Position: Chr04:6237164..6237231 (- strand)
Length: 68
Type: CDS
Position: Chr04:6237930..6238320 (- strand)
Length: 391
Type: CDS
Position: Chr04:6238321..6238403 (- strand)
Length: 83
Type: five_prime_UTR


>Vigan.04G065600.01
ATAAGATCCA CAAAAAATTC AGGTTGGGCT GGAGATTATG ATCCAAAAGC GCACGAACTT GGTCCACTCA AAACCTATGG
CTTATGTTCG ATCTCTCAAC CATTTCACCT TCGTATCACA TGCTGCACCC ATGCACACAC CACACAAATA ATAACCCAAA
AAAAAAAAAA CAAAAAACAG CAATTCTGAA GGAAATGCTC AGAAGCAGCA CTTTAACACA GAGTGTTACA GTCACCTGTG
TTCGTCACAG TCACAGACAA TGGCACCAAT CAATTCCTGT GAACTATAGA GTCTGTGACG CTTCTCGTAA CACTCTGTCA
TCGAACTCCG CGATCTTCAA GTGGAAGAGA AAATCGAATA CTAAACGTAA CAGCTCTGGA ATGGGAACCT TCACCACGCG
CGCGTTGGCG CAGCCGCTGA GGAACGCCGA TGAGCTCATC GATTCCGTCG AGACGTTTAT CTTCGACTGT GACGGAGTTA
TATGGAAAGG GGACAAATTA ATAGGAGGAG TGCCCGAAAC ACTTGACATG CTCCGGTCAA AGGGAAAAAG ATTAGTTTTT
GTCACCAACA ACTCAACCAA GTCTAGGAAG CAGTATGGAA AGAAGTTTGA ATCCCTTGGC CTGAATGTCA GCGAGGAGGA
GATTTTTGCG TCATCCTTTG CTGCTGCTGC ATATCTGAAG TCCATTGATT TCCCAAAAGA TAAAAAGGTT TATGTCATTG
GAGAAGATGG CATCTTGAAA GAGCTTGAGC TTGCTGGATA TCAGTACCTT GGTGGGCCGG AAGATGGCGG GAAAAAGATA
GAACTGAAGC CAGGTTTTTT GATGGAGCAC GATGAAAATG TTGGAGCAGT TGTTGTTGGG TTTGATCGCT ACTTCAACTA
CTATAAAATC CAGTATGGAA CACTCTGCAT ACGTGAAAAC CCTGGATGCC TTTTCATTGC TACAAATCGT GATGCTGTTA
CTCATCTCAC AGATGCTCAA GAATGGGCCG GTGGGGGCTC AATGGTTGGC GCCATCAGTG GATCTACTCA ACGTGAGCCG
ATAGTCGTTG GAAAACCCTC AACGTTTATG ATGGATTACT TAGCAAACGA ATTTGGCATT TCGAAGTCAC AGATATGCAT
GGTTGGGGAC AGATTAGACA CTGATATCTT ATTTGGGCAA AATGGTGGTT GCAAAACTCT TCTTGTGCTC TCCGGAGTCA
CCACGCTGCC CATGCTCCAG AGTCCTAACA ACGCCATACA ACCAGACTTT TACACCAACA AAATTTCAGA TTTTCTTAGC
CTTAACGCTG CAGCTGTATG ACCATACAGT TTGCATTTAT AATTTAATTT ATAAATGTAT CATCCCCCAA TTGAAGGTGG
GGAAGGAAAA TCGTGTATTT TATTTAAGTA AATAATTAGA AAATGTTCCT TTATTTTTCC ACTAAAGAGA ATTGTGTACA
AGATTATGAA ATGGTTATCT GTCAATATAA ATCTTAATTA TGCAA

>Vigan.04G065600.01
ATGTTCGATC TCTCAACCAT TTCACCTTCG TATCACATGC TGCACCCATG CACACACCAC ACAAATAATA ACCCAAAAAA
AAAAAAACAA AAAACAGCAA TTCTGAAGGA AATGCTCAGA AGCAGCACTT TAACACAGAG TGTTACAGTC ACCTGTGTTC
GTCACAGTCA CAGACAATGG CACCAATCAA TTCCTGTGAA CTATAGAGTC TGTGACGCTT CTCGTAACAC TCTGTCATCG
AACTCCGCGA TCTTCAAGTG GAAGAGAAAA TCGAATACTA AACGTAACAG CTCTGGAATG GGAACCTTCA CCACGCGCGC
GTTGGCGCAG CCGCTGAGGA ACGCCGATGA GCTCATCGAT TCCGTCGAGA CGTTTATCTT CGACTGTGAC GGAGTTATAT
GGAAAGGGGA CAAATTAATA GGAGGAGTGC CCGAAACACT TGACATGCTC CGGTCAAAGG GAAAAAGATT AGTTTTTGTC
ACCAACAACT CAACCAAGTC TAGGAAGCAG TATGGAAAGA AGTTTGAATC CCTTGGCCTG AATGTCAGCG AGGAGGAGAT
TTTTGCGTCA TCCTTTGCTG CTGCTGCATA TCTGAAGTCC ATTGATTTCC CAAAAGATAA AAAGGTTTAT GTCATTGGAG
AAGATGGCAT CTTGAAAGAG CTTGAGCTTG CTGGATATCA GTACCTTGGT GGGCCGGAAG ATGGCGGGAA AAAGATAGAA
CTGAAGCCAG GTTTTTTGAT GGAGCACGAT GAAAATGTTG GAGCAGTTGT TGTTGGGTTT GATCGCTACT TCAACTACTA
TAAAATCCAG TATGGAACAC TCTGCATACG TGAAAACCCT GGATGCCTTT TCATTGCTAC AAATCGTGAT GCTGTTACTC
ATCTCACAGA TGCTCAAGAA TGGGCCGGTG GGGGCTCAAT GGTTGGCGCC ATCAGTGGAT CTACTCAACG TGAGCCGATA
GTCGTTGGAA AACCCTCAAC GTTTATGATG GATTACTTAG CAAACGAATT TGGCATTTCG AAGTCACAGA TATGCATGGT
TGGGGACAGA TTAGACACTG ATATCTTATT TGGGCAAAAT GGTGGTTGCA AAACTCTTCT TGTGCTCTCC GGAGTCACCA
CGCTGCCCAT GCTCCAGAGT CCTAACAACG CCATACAACC AGACTTTTAC ACCAACAAAA TTTCAGATTT TCTTAGCCTT
AACGCTGCAG CTGTATGA

>Vigan.04G065600.01
MFDLSTISPS YHMLHPCTHH TNNNPKKKKQ KTAILKEMLR SSTLTQSVTV TCVRHSHRQW HQSIPVNYRV CDASRNTLSS
NSAIFKWKRK SNTKRNSSGM GTFTTRALAQ PLRNADELID SVETFIFDCD GVIWKGDKLI GGVPETLDML RSKGKRLVFV
TNNSTKSRKQ YGKKFESLGL NVSEEEIFAS SFAAAAYLKS IDFPKDKKVY VIGEDGILKE LELAGYQYLG GPEDGGKKIE
LKPGFLMEHD ENVGAVVVGF DRYFNYYKIQ YGTLCIRENP GCLFIATNRD AVTHLTDAQE WAGGGSMVGA ISGSTQREPI
VVGKPSTFMM DYLANEFGIS KSQICMVGDR LDTDILFGQN GGCKTLLVLS GVTTLPMLQS PNNAIQPDFY TNKISDFLSL
NAAAV*