GBrowse Details

Vigan.04G066400.01

Basic Information:
Name: Vigan.04G066400.01
Multiple alignment
Variant Information
Position: Chr04:6318415..6320192 (+ strand)
Length: 1778
Functional Information:
Description: Similar to Acyl carrier protein. [V7B1L5, Phaseolus vulgaris]
GO: Biological Process: fatty acid biosynthetic process (GO:0006633)
InterPro: Acyl carrier protein (ACP) (IPR003231)
Phosphopantetheine attachment site (IPR006162)
Acyl carrier protein-like (IPR009081)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:167.28,155.97,108.29,47.18,137.54,195.19,86.90,71.56
Arabidopsis thaliana homolog: AT1G65290.1
Automatic updates:
Name: NM_001251150 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative acyl carrier protein (LOC100499669), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251706 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305656 (LOC100305656), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:6318415..6318559 (+ strand)
Length: 145
Type: five_prime_UTR
Position: Chr04:6318560..6318769 (+ strand)
Length: 210
Type: CDS
Position: Chr04:6319610..6319786 (+ strand)
Length: 177
Type: CDS
Position: Chr04:6319787..6320192 (+ strand)
Length: 406
Type: three_prime_UTR


>Vigan.04G066400.01
CCCAGGCTGT GCAGATGGAA GAGAAGAGTG TGTTTTGGTT ATTGTGATCC ATCATCAACA AAACATAAGA AAGAAGAGAG
AATCGAAAAG ACGAGAAGAG GGTAGAGAGT GAGTTCTAGG TTGGTTTCAC AGTTGCAGCA GATCCATGGC GGCGAGTAGG
AGCACTTTAC CATTGATCAA ATACCTGAGA GTGCGCGTCG ACGCTCTTCC CCGCAACTCT CCGTTAACCC TCGCTCCCAC
CGTCTTCCTT CGCCGTTTTT GTGAAGAGGT TCGTGGCAGT TTTCTCGACA AGTCCGAGGT CGCAGATCGC GTCATCTCCT
GCGTCAAAAA CTTCCAGAAA GTCGACCCGG CCAAGGTTAC CCCGAATGCT CACTTCCATA ATGACCTCGG ACTGGATAGT
TTGGATGCTG TGGAGATTGT GATGGCTCTT GAGGAAGAGT TTGGGTTTGA GATTCCTGAT AATGAGGCTG ACAAGATCAA
CTCTATTAAA CATGCTGTGG ACTTCATTGC ATCCCATCCT CAGGCAAAGT AGAGTGTATA CTATTTGTTT TGTTTCCCAT
TATCTAGTTT AGGTGCATCA GACATTTTTG CTACCAAAGT GATATTGTTT TCTCATCCCT TAGAAGAGTG TTTGCTGGGA
ATGTGCCAGC TTCCTTTGGT GGTATTGACG TCACCGAACT TCACATTTTG TGTTCCTCCG TTATTCATGT CAATAAGAAT
TGTGTTGAAT TTCTGATTAT TCTTTAGTTC TCCTCAGCAA CAGATGCTTT GTGCTATTAT TCTCTTCTGC TTTGTTTTTT
TTACTTCATT TGTAATAGTC ATACTCTTGT TTAGTATCCA CGCACCAAGA TCGATGTTAT ACATGGCTGG ATGCTTCATG
TGCGAAGAGT TGTTCCCGTT CTAAGGAAGA TCTTCTTTTA CCCATTGGTT CTGTTGTT

>Vigan.04G066400.01
ATGGCGGCGA GTAGGAGCAC TTTACCATTG ATCAAATACC TGAGAGTGCG CGTCGACGCT CTTCCCCGCA ACTCTCCGTT
AACCCTCGCT CCCACCGTCT TCCTTCGCCG TTTTTGTGAA GAGGTTCGTG GCAGTTTTCT CGACAAGTCC GAGGTCGCAG
ATCGCGTCAT CTCCTGCGTC AAAAACTTCC AGAAAGTCGA CCCGGCCAAG GTTACCCCGA ATGCTCACTT CCATAATGAC
CTCGGACTGG ATAGTTTGGA TGCTGTGGAG ATTGTGATGG CTCTTGAGGA AGAGTTTGGG TTTGAGATTC CTGATAATGA
GGCTGACAAG ATCAACTCTA TTAAACATGC TGTGGACTTC ATTGCATCCC ATCCTCAGGC AAAGTAG

>Vigan.04G066400.01
MAASRSTLPL IKYLRVRVDA LPRNSPLTLA PTVFLRRFCE EVRGSFLDKS EVADRVISCV KNFQKVDPAK VTPNAHFHND
LGLDSLDAVE IVMALEEEFG FEIPDNEADK INSIKHAVDF IASHPQAK*