VIGGS:GBrowse

Vigan.04G067400.01

Basic Information:

Name:	Vigan.04G067400.01 Multiple alignment Variant Information
Position:	Chr04:6424818..6428225 (- strand)
Length:	3408

Functional Information:

Description:	Similar to Uncharacterized protein. [B7FGW0, Medicago truncatula]
GO:	Biological Process: glycerol ether metabolic process (GO:0006662)
	Biological Process: cell redox homeostasis (GO:0045454)
	Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro:	Thioredoxin (IPR005746)
	Thioredoxin-like fold (IPR012336)
	Thioredoxin domain (IPR013766)
	Thioredoxin, conserved site (IPR017937)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.78,1.75,104.35,681.42,3.35,83.38,4.46,128.21
Arabidopsis thaliana homolog:	AT5G16400.1

Automatic updates:

Name:	NM_001248943 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499776 (LOC100499776), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249741 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306555 (LOC100306555), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:6424818..6425002 (- strand)
Length:	185
Type:	three_prime_UTR

Position:	Chr04:6425003..6425137 (- strand)
Length:	135
Type:	CDS

Position:	Chr04:6425531..6425630 (- strand)
Length:	100
Type:	CDS

Position:	Chr04:6427335..6427645 (- strand)
Length:	311
Type:	CDS

Position:	Chr04:6427646..6428225 (- strand)
Length:	580
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G067400.01
AGGCTTAATC CTCAACAGTG TAACTAGGGA TTGCTTCCAA ATGCTAACGC TTTACCAGGG ATGAATGATC TCACAAGTTT
GTTCATTGTT CAGCAGCTTC TTCTCTCAAT GCCATCGATT CCTCCTCTTT TCAGTGTTCG TCAAATCTCC ATGCAAAGGT
CTAATTTGTT CCTCTTTCTT TTTCCCATGT CTTCATCACA GTTTCAATTG CATCAGAAAT TTCAACATAA CGCCTTTATT
TTTATGTGGA GATCAAAGAT TTTATGATCA TTTATGTGGA GAAGAAGAGC TCCAAAATGC AGAATCAAAG ACGTTTTTGT
TTTTTCTCGA ATCCAAAAAA TCAGACAAGG GTACTTTGGT AATAACAAAA AAACTAGACG TGCTTGTTTG TTCCACCATC
ACTGTGTCTG CTAATTTCAA TTTACCAAAA CCACCCTCAT CCTGAGATAG CAACAATATC ATACACAAAT CACAAGGGCA
ATCATGTCTT TTCCTGTTGC ACCTCCTCCC CTCCACATGC ATTTGCTATA TGTGAGATGA GTTCTTTCCC CTTTGCCATT
GGAACTCCCA GCAACCACCA ATGGCTCTGA ATGTTTGTGT TTCTCCAAAC CCTAAATGGG TTGCATCTCC TTCCTTAGAT
AGTGGTTCTT CTTTGAGACC TTCACTTGGG TCTTGTTTTG GTAACCTAAA CATTCCTAGT GTGAATCTCA ACTTGAGTAC
TAGAACCACA AGTTTGAGTT TGAGAAGAAG TTTTAGTGTA AGATCTAGTT TGGAAACTGC AGGGCCCACA GTCACAGTAG
GACAAGTCAC CGAGGTAAAC AAGGACACCT TCTGGCCGAT TGTTAAGGCT GCCGGGGATA AAACCGTTGT CCTAGACATG
TACACCCAAT GGTGTGGCCC TTGCAAAGTG ATGGCTCCAA AGTTTCAAGA ATTATCTAAG AAGTATGAGG ATGTTGTCTT
TCTAAAGCTT GATTGCAACC AAGACAACAG GCCATTGGCA AAAGAGCTGG GGATTAAAGT GGTTCCCACT TTTAAAATTC
TGAAGGACAA CAAGGTTGTA AAAGAAGTTA CTGGAGCTAA ATACGATGAT TTGATTGCTG CCATTGACAA TGTTCGATTG
AGCTAAGAAT ATAAGTATTC TCTTTCCATG TAAAAATATT ATGCTTGACA CCCTCTGTAA GTATTCTATG CAATTGTAAG
ATGATGAGGA TTGGAAGATG AAGAAATGGT TTCATGTGAT TGTTGTAAGC TAATTGTTTA TTCCCTAAAG GAAGAGTTAC
TCGATTATCC AAGTTATCAA CTTGATCATG G

[show][hide][copy]CDS

>Vigan.04G067400.01
ATGGCTCTGA ATGTTTGTGT TTCTCCAAAC CCTAAATGGG TTGCATCTCC TTCCTTAGAT AGTGGTTCTT CTTTGAGACC
TTCACTTGGG TCTTGTTTTG GTAACCTAAA CATTCCTAGT GTGAATCTCA ACTTGAGTAC TAGAACCACA AGTTTGAGTT
TGAGAAGAAG TTTTAGTGTA AGATCTAGTT TGGAAACTGC AGGGCCCACA GTCACAGTAG GACAAGTCAC CGAGGTAAAC
AAGGACACCT TCTGGCCGAT TGTTAAGGCT GCCGGGGATA AAACCGTTGT CCTAGACATG TACACCCAAT GGTGTGGCCC
TTGCAAAGTG ATGGCTCCAA AGTTTCAAGA ATTATCTAAG AAGTATGAGG ATGTTGTCTT TCTAAAGCTT GATTGCAACC
AAGACAACAG GCCATTGGCA AAAGAGCTGG GGATTAAAGT GGTTCCCACT TTTAAAATTC TGAAGGACAA CAAGGTTGTA
AAAGAAGTTA CTGGAGCTAA ATACGATGAT TTGATTGCTG CCATTGACAA TGTTCGATTG AGCTAA

[show][hide][copy]PROTEIN

>Vigan.04G067400.01
MALNVCVSPN PKWVASPSLD SGSSLRPSLG SCFGNLNIPS VNLNLSTRTT SLSLRRSFSV RSSLETAGPT VTVGQVTEVN
KDTFWPIVKA AGDKTVVLDM YTQWCGPCKV MAPKFQELSK KYEDVVFLKL DCNQDNRPLA KELGIKVVPT FKILKDNKVV
KEVTGAKYDD LIAAIDNVRL S*