GBrowse Details

Vigan.04G068400.01

Basic Information:
Name: Vigan.04G068400.01
Multiple alignment
Variant Information
Position: Chr04:6536573..6541222 (+ strand)
Length: 4650
Functional Information:
Description: Similar to Isopentenyl pyrophosphate isomerase. [Q6EJD1, Pueraria montana var. lobata]
GO: Biological Process: isoprenoid biosynthetic process (GO:0008299)
Molecular Function: isopentenyl-diphosphate delta-isomerase activity (GO:0004452)
Molecular Function: hydrolase activity (GO:0016787)
InterPro: NUDIX hydrolase domain (IPR000086)
Isopentenyl-diphosphate delta-isomerase, type 1 (IPR011876)
NUDIX hydrolase domain-like (IPR015797)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:57.48,35.35,134.00,94.18,103.08,116.12,115.87,59.36
Arabidopsis thaliana homolog: AT3G02780.1
Automatic updates:
Name: NM_001255206 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max isopentenyl-diphosphate Delta-isomerase II-like (LOC100789313), mRNA.
PubMed ID: 30786857 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:6536573..6536716 (+ strand)
Length: 144
Type: five_prime_UTR
Position: Chr04:6536717..6536982 (+ strand)
Length: 266
Type: CDS
Position: Chr04:6538181..6538236 (+ strand)
Length: 56
Type: CDS
Position: Chr04:6539130..6539221 (+ strand)
Length: 92
Type: CDS
Position: Chr04:6539859..6539961 (+ strand)
Length: 103
Type: CDS
Position: Chr04:6540060..6540197 (+ strand)
Length: 138
Type: CDS
Position: Chr04:6540465..6540718 (+ strand)
Length: 254
Type: CDS
Position: Chr04:6540719..6541222 (+ strand)
Length: 504
Type: three_prime_UTR


>Vigan.04G068400.01
GGAGAACAAG AATAGTTTAA TGCGAATTAT TTGACCATTG AATATATTAA TTTCTATAAA TATGTGGCAT GAACATATGA
AGTGATGTAA TTAGTAAAAG TTTGTGGTGC GGTGCGTTTA AGGAAGAAAT CGAAAATCGG AAAAATGGCA CAATCATCGA
TCGGTTTTAC TCTGAGCCAG AACCTGTTTA AAAGGAACGT TGCAGCAAGC GTGATTACTC ACACTCCTTC CATTTTCAGA
GGATATCGTT CTCTTCCTTC TTTCTCTTTC TCTCAGAGGA GAAGAAGACA CCACACACCT CTCTCTCTCT CCGCCTCCTT
CTCCTCAACA ACCGCCATGG GTGAAACTCC CGCCACCACC GCCGATGCCG GCATGGACGC CGTCCAGCGC CGCCTTATGT
TTGAAGACGA ATGCATTTTG GTGGATGAGA ATGACCGCGT GGTTGGTCAC GATTCCAAAT ACAATTGTCA CTTGATGGAG
AAGATTGAGG CTGAAAATTT GCTGCATAGA GCTTTCAGTG TATTTCTGTT CAACTCAAAG TATGAGCTGC TGCTCCAGCA
ACGATCTGCA ACCAAGGTAA CATTCCCTCT TGTGTGGACA AACACCTGTT GCAGCCATCC ACTGTACCGT GAATCTGAGC
TGATTGAAGA GAATGCCCTT GGAGTAAGAA ATGCAGCTCA GAGGAAGCTT TTGGATGAGC TCGGTATTCC TGCTGAAGAT
GTACCAGTTG ATCAGTTCAC CTCACTGGGT CGCATACTTT ACAAGGCACC TTCTGATGGC AAATGGGGAG AGCATGAACT
GGACTATCTG CTTTTTATTG TCCGTGATGT TAACGTGAAT CCCAATCCTG ATGAAGTGGC TGATATCAAG TATGTGAACC
GCGATCAGTT GAAGGAGCTG TTGAGGAAAG CCGATGCAGG AGAAGAAGGT CTGAAGCTGT CTCCATGGTT CAGACTAGTT
GTGGACAATT TCTTATTCAA ATGGTGGGAC CATCTCGAGC AAGGAACTCT CGGTGAGATC ATTGACATGA AGACCATTCA
CAAATTGACA TAAAATCCAG AGAGGAGCTT GCTGCATCAT GTAATGAAGG GTACCTGTAT TCCCCAACCA ATAAGAGTCA
AAATAATAAC CTATTTTCTA GAGAATTTCG GAGCAGTACC CCAATAGAAG TTGTTAGTCT TTTTTCTTAT TTTCAATGAT
AGCCGGAACA TTAAACTATA AGAATTTTTT GTTGCATATT TCGGATTTTG GGGTGCAGTG AAACACTCTG AATAAGTAAG
ATGGTTAGTG ATATGAATCA AACATTATCG TGGTGTCGGT CGGCGTTTGT TAGTGGATAT TTTGTTTACA TTTTAAACGT
TTCAATGATT AACGATCGTA TCTCTCCAAA ACTGAGGATC GGAAAATCCC ACTATGACGT GTGGTGCTAC AGAAACACGG
ATCCAGATTG CGATTCTCCG TTCACAGCGA AGCATGAGTT GCACTGCACT TCTACTTATA TATGCATTAA TACATTAGTT
TTAACTTATG TAAAAAAACT TCATCTGTTC ATCTCCA

>Vigan.04G068400.01
ATGGCACAAT CATCGATCGG TTTTACTCTG AGCCAGAACC TGTTTAAAAG GAACGTTGCA GCAAGCGTGA TTACTCACAC
TCCTTCCATT TTCAGAGGAT ATCGTTCTCT TCCTTCTTTC TCTTTCTCTC AGAGGAGAAG AAGACACCAC ACACCTCTCT
CTCTCTCCGC CTCCTTCTCC TCAACAACCG CCATGGGTGA AACTCCCGCC ACCACCGCCG ATGCCGGCAT GGACGCCGTC
CAGCGCCGCC TTATGTTTGA AGACGAATGC ATTTTGGTGG ATGAGAATGA CCGCGTGGTT GGTCACGATT CCAAATACAA
TTGTCACTTG ATGGAGAAGA TTGAGGCTGA AAATTTGCTG CATAGAGCTT TCAGTGTATT TCTGTTCAAC TCAAAGTATG
AGCTGCTGCT CCAGCAACGA TCTGCAACCA AGGTAACATT CCCTCTTGTG TGGACAAACA CCTGTTGCAG CCATCCACTG
TACCGTGAAT CTGAGCTGAT TGAAGAGAAT GCCCTTGGAG TAAGAAATGC AGCTCAGAGG AAGCTTTTGG ATGAGCTCGG
TATTCCTGCT GAAGATGTAC CAGTTGATCA GTTCACCTCA CTGGGTCGCA TACTTTACAA GGCACCTTCT GATGGCAAAT
GGGGAGAGCA TGAACTGGAC TATCTGCTTT TTATTGTCCG TGATGTTAAC GTGAATCCCA ATCCTGATGA AGTGGCTGAT
ATCAAGTATG TGAACCGCGA TCAGTTGAAG GAGCTGTTGA GGAAAGCCGA TGCAGGAGAA GAAGGTCTGA AGCTGTCTCC
ATGGTTCAGA CTAGTTGTGG ACAATTTCTT ATTCAAATGG TGGGACCATC TCGAGCAAGG AACTCTCGGT GAGATCATTG
ACATGAAGAC CATTCACAAA TTGACATAA

>Vigan.04G068400.01
MAQSSIGFTL SQNLFKRNVA ASVITHTPSI FRGYRSLPSF SFSQRRRRHH TPLSLSASFS STTAMGETPA TTADAGMDAV
QRRLMFEDEC ILVDENDRVV GHDSKYNCHL MEKIEAENLL HRAFSVFLFN SKYELLLQQR SATKVTFPLV WTNTCCSHPL
YRESELIEEN ALGVRNAAQR KLLDELGIPA EDVPVDQFTS LGRILYKAPS DGKWGEHELD YLLFIVRDVN VNPNPDEVAD
IKYVNRDQLK ELLRKADAGE EGLKLSPWFR LVVDNFLFKW WDHLEQGTLG EIIDMKTIHK LT*