GBrowse Details

Vigan.04G070400.01

Basic Information:
Name: Vigan.04G070400.01
Multiple alignment
Variant Information
Position: Chr04:6721662..6728708 (- strand)
Length: 7047
Functional Information:
Description: Similar to Uncharacterized protein. [I1L6C1, Glycine max]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: ATPase activity (GO:0016887)
Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro: ABC transporter-like (IPR003439)
AAA+ ATPase domain (IPR003593)
ABC transporter, conserved site (IPR017871)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.17,13.31,17.31,20.54,10.77,8.01,6.88,14.60
Arabidopsis thaliana homolog: AT1G65410.1
Automatic updates:
Name: NM_001255674 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like (LOC100783283), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:6721662..6722062 (- strand)
Length: 401
Type: three_prime_UTR
Position: Chr04:6722063..6722101 (- strand)
Length: 39
Type: CDS
Position: Chr04:6725188..6725272 (- strand)
Length: 85
Type: CDS
Position: Chr04:6725380..6725555 (- strand)
Length: 176
Type: CDS
Position: Chr04:6726084..6726191 (- strand)
Length: 108
Type: CDS
Position: Chr04:6726395..6726470 (- strand)
Length: 76
Type: CDS
Position: Chr04:6726619..6726680 (- strand)
Length: 62
Type: CDS
Position: Chr04:6726767..6726844 (- strand)
Length: 78
Type: CDS
Position: Chr04:6726935..6727030 (- strand)
Length: 96
Type: CDS
Position: Chr04:6727757..6727885 (- strand)
Length: 129
Type: CDS
Position: Chr04:6728040..6728228 (- strand)
Length: 189
Type: CDS
Position: Chr04:6728229..6728708 (- strand)
Length: 480
Type: five_prime_UTR


>Vigan.04G070400.01
TCAGCATAGT AGAAATTTCA CGAATTACTT GAATTTAATG ACTCACTTTA AACATAATTT ATTGGGACAA AAAGAAAGTG
TCAAAAAGAT CGACTCGTAA AAATGGTTGA AAGAGAATTG TAAAGTTGCG TGTGTGAAAT TAGGAGGGTG AGAGGGACGA
GCATGGATCA TAGTCCATAA TTCTCAGTGT TGATTTGTCT TCTTCCCTTC CAATTCGAAT CCAGGGTAAG CCTAAACTAA
ACCAAACTCT GTCGATACTT TGCTACAATT AGAGAGAAAC AAAGACAAAG AAACAGAATC AGGTCTTCCC CAACCTCAAG
CAACAAAAAA ACCACCGGCC ATTTCCATTT GACCATCATT GCTACTTTTG AAAGGAAACT CTAAACCCCA TATGAATCAC
ATGCTTTCCA TCTCATAACA CAACAACCCC ACTTATATTA ATTCTTCTCT TCTCTTTTCC TTTCTTCATT CCTCATTACC
ATGGTTTCCC TGTCAACCAC CACCCCCTTT CTACCCTTCA CTGCACAAAA CGCTTCCACC AGAATCCCTC CTCCCAACAC
CTTCCGTTAC ACCAACCACC GTCATAGGGA TCACCGGAAG GTTGTGTGCG CCTGCATCGC ACCTCCGCAG AACTTCAAGA
GCCAGGACTC TTCCCCTGTT AATTTCAATG GTTTGCACAA ATCAGAACAG CTGAGCGCGG CGCGGGATCA GGATGATGAT
TCTGATGTTC TTATTGAGTG TAGAGATGTG TACAAATCTT TCGGGGAAAA GAAAATCTTA AATGGTGTCA GCTTCAAGAT
CAGGCACGGT GAAGCTGTTG GAATAATTGG TCCCTCTGGG ACTGGTAAAT CTACAGTTTT GAAGATTATA GCAGGACTTC
TTGCTCCGGA TAAGGGGGAA GTTTACATTC GAGGAAAAAA GAGGGTTGGT TTAGTAAGCG ATGATAACCT ATCTGGTCTT
CGGATTGGAT TAGTTTTCCA AAGTGCCGCA CTCTTTGATT CTTTGTCTGT TCGTGAAAAT GTTGGTTTTC TCTTGTATGA
ACACTCGAGT ATGTCTGAGG ACCAGATATC AGAGCTTGTC AAGGAAACTT TGGCTGCAGT TGGATTGAAG GGAGTTGAAG
ATCGGTTGCC TTCTGAATTA TCAGGTGGGA TGAAAAAGCG AGTTGCTTTG GCACGTTCTA TTATCTGTGA CACCACAAAG
GAATCAATTG AGCCAGAGGT GCTTTTATAT GACGAACCAA CTGCTGGACT TGATCCTATT GCATCTACTG TTGTTGAGGA
TCTGATTCGC TCAGTGCACA TAAAAGGACG AGATGCTCGT GGAAAACCTG GGAATATTGC ATCTTATGTG GTTGTTACTC
ACCAACATAG TACCATTAAA AGAGCCATTG ATAGATTGTT GTTTCTACAC AAGGGAACGA TTGTTTGGGA AGGAATGACT
CATGAATTTA CAACTACAAC AAATCCAATT GTTCAGCAGT TTGCATCCGG CAGCCTAGAT GGTCCTATCA AATATTAGAA
CACTACTGAA ATTGTAAAGT AGACAACATC GATTACGGCT GGTTTTGGCT ATCCTGGAAT GTGCACATAC AAATGGACAA
TAAGCTGGTT GCAACAAGGA TTAACATCAA TAGAATTGGC TACCTGCATC GGATTAGAGG CCGACAATAA CAATTTTTCC
TTTTTATGGT TAGAGGACAG TTTATTATTA CTGTTATTGA TTACTAAATT CATTGGCAAT AGAAGGTGCT TTGATGCACG
CCTGATGTTA GAAAAGATTA TGTTAGAAAA GATTGGTGGA ACAGCTGTAT TTAGTTCTAT GCGGAGAGTT TGATGTGCTA
GATTGTGTTT TTGTAAGCAA ATCATTATAA TCAATAAATC TGCTTCATGG TTTTTAATTT TCATAGTCCC AAGTCCTCC

>Vigan.04G070400.01
ATGGTTTCCC TGTCAACCAC CACCCCCTTT CTACCCTTCA CTGCACAAAA CGCTTCCACC AGAATCCCTC CTCCCAACAC
CTTCCGTTAC ACCAACCACC GTCATAGGGA TCACCGGAAG GTTGTGTGCG CCTGCATCGC ACCTCCGCAG AACTTCAAGA
GCCAGGACTC TTCCCCTGTT AATTTCAATG GTTTGCACAA ATCAGAACAG CTGAGCGCGG CGCGGGATCA GGATGATGAT
TCTGATGTTC TTATTGAGTG TAGAGATGTG TACAAATCTT TCGGGGAAAA GAAAATCTTA AATGGTGTCA GCTTCAAGAT
CAGGCACGGT GAAGCTGTTG GAATAATTGG TCCCTCTGGG ACTGGTAAAT CTACAGTTTT GAAGATTATA GCAGGACTTC
TTGCTCCGGA TAAGGGGGAA GTTTACATTC GAGGAAAAAA GAGGGTTGGT TTAGTAAGCG ATGATAACCT ATCTGGTCTT
CGGATTGGAT TAGTTTTCCA AAGTGCCGCA CTCTTTGATT CTTTGTCTGT TCGTGAAAAT GTTGGTTTTC TCTTGTATGA
ACACTCGAGT ATGTCTGAGG ACCAGATATC AGAGCTTGTC AAGGAAACTT TGGCTGCAGT TGGATTGAAG GGAGTTGAAG
ATCGGTTGCC TTCTGAATTA TCAGGTGGGA TGAAAAAGCG AGTTGCTTTG GCACGTTCTA TTATCTGTGA CACCACAAAG
GAATCAATTG AGCCAGAGGT GCTTTTATAT GACGAACCAA CTGCTGGACT TGATCCTATT GCATCTACTG TTGTTGAGGA
TCTGATTCGC TCAGTGCACA TAAAAGGACG AGATGCTCGT GGAAAACCTG GGAATATTGC ATCTTATGTG GTTGTTACTC
ACCAACATAG TACCATTAAA AGAGCCATTG ATAGATTGTT GTTTCTACAC AAGGGAACGA TTGTTTGGGA AGGAATGACT
CATGAATTTA CAACTACAAC AAATCCAATT GTTCAGCAGT TTGCATCCGG CAGCCTAGAT GGTCCTATCA AATATTAG

>Vigan.04G070400.01
MVSLSTTTPF LPFTAQNAST RIPPPNTFRY TNHRHRDHRK VVCACIAPPQ NFKSQDSSPV NFNGLHKSEQ LSAARDQDDD
SDVLIECRDV YKSFGEKKIL NGVSFKIRHG EAVGIIGPSG TGKSTVLKII AGLLAPDKGE VYIRGKKRVG LVSDDNLSGL
RIGLVFQSAA LFDSLSVREN VGFLLYEHSS MSEDQISELV KETLAAVGLK GVEDRLPSEL SGGMKKRVAL ARSIICDTTK
ESIEPEVLLY DEPTAGLDPI ASTVVEDLIR SVHIKGRDAR GKPGNIASYV VVTHQHSTIK RAIDRLLFLH KGTIVWEGMT
HEFTTTTNPI VQQFASGSLD GPIKY*