GBrowse Details

Vigan.04G072700.01

Basic Information:
Name: Vigan.04G072700.01
Multiple alignment
Variant Information
Position: Chr04:6939292..6941854 (+ strand)
Length: 2563
Functional Information:
Description: Similar to Reticulon-like protein. [V7B5M3, Phaseolus vulgaris]
InterPro: Reticulon (IPR003388)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.25,15.81,33.50,31.40,28.53,56.88,40.58,39.24
Automatic updates:
Name: NM_001252724 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max reticulon-like protein B5-like (LOC100793862), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253302 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max reticulon-like protein B5-like (LOC100778096), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:6939292..6939636 (+ strand)
Length: 345
Type: five_prime_UTR
Position: Chr04:6939637..6939847 (+ strand)
Length: 211
Type: CDS
Position: Chr04:6940365..6940545 (+ strand)
Length: 181
Type: CDS
Position: Chr04:6940637..6940778 (+ strand)
Length: 142
Type: CDS
Position: Chr04:6940972..6941041 (+ strand)
Length: 70
Type: CDS
Position: Chr04:6941131..6941297 (+ strand)
Length: 167
Type: CDS
Position: Chr04:6941298..6941854 (+ strand)
Length: 557
Type: three_prime_UTR


>Vigan.04G072700.01
TTTATTTATC AAATTAAAAA ATTAAACTTT ACCATTATTT TTAATAGAAA ATGTATATTT CAGAAAAAAG AAATCACTTG
GGAGTTGAGG TCCTCGTTAC TGTCATACCT AATTCAAACG CCGTCATTTC CTATTTCGAT TCAAATCTCA CCGAGCCTGA
GGTTCGGACC GACGAACCTC GATGTTTGCG ACACTTATAA AACCCATACT GAGATTCGCA CTCTCCAACC CTACTCTCAC
ACTCACTGCA ACAACTGTAA CCAAAGAGAG AAGGGACTTT CTTCCATTCC GTGCTACGAT ATCGACGCAT TAGGGTTAGA
GTTCTTTTGA AAAAATTTCG GCTTTATGGC TGAGGAACCG GAAAGCACCG TCACCACTGG CGCCGAAGCC GACCAATCGT
TGCTGGATAA GATAAGCGAG AAGCTTCACG GTCACGATTC CTCGTCCTCT TCCGATTCGG ATTCCGAAAA AACCGTCACT
TCGTCCGTTA AGGATAAGAT TTTCCGCCTC TTCGGTAGGC AGAGGCCCGT TCATTCCGTG TTGGGCGCCG GAAAACCTGC
TGACTTGTTA TTGTGGAGGA ACAAGAAGAT ATCTGCTGGC GTGCTTGGCG GAGCCACTGC TGTTTGGGTC CTGTTTGAGT
TGCTTGAGTA TCACTTTCTT ACTCTGGTGT GTCACATTTT GATACTGTTG CTCGCAGTTC TGTTCTTGTG GTCCAATGCC
CATACTTTTA TTCACAAATC AGCACCTCGC ATTCCAGAAG TTCATCTTCC CGAGGAGCCA TTCCTGCAAG TGGCATCCGC
GTTGAGGATT GAAATCAACA GGGGATTTGC TGTTTTGCAT AGTATTGGTT CTGGAAGAGA TTTGAAGAAA TTCCTAATGG
TTATTGCTGG CGTTTGGATT CTATCAATTG TGGGGATCTG GTGCAACTTC TTGACCCTCT TCTACATAAC TTTTATCTTG
TTGTACACGG CTCCTGTGAT ATACGAGAAG TACGAGGATA AGATAGATCC ACTTGCAGAG AAGGCAGTTA TTGAGATTAA
AAAGCAGTAT GCTGTGTTTG ATGCTAAGGT CTTGAGTAAG ATCCCGGTGG GTTCTTTAAA AGCTAAGTTA TCTTAGTGAG
TTAATCTTTG TAACATCACA AAGAAAGAGC TCCACTTATT TGGTCAAGGA AGTTGCCAGG GCCAGTTTCT TTTATCAAAT
GTCAGTCTTT GATTTTTTCT GGGTTGGTTT TAGGCTGGTA TGGTGTCAAT GGCAATGGGT CTGATTTATC TTAAAAAATA
GTAATTCTCA GTAGTTTCTA ACTGTGCAAG CTCATGGATT TTACTGGGGT TTTTGTTGTT GAAGGTTTGT ATGAGTTGAT
CAATACAATA ATTTGTACTG TAAGATAAAA TGTATGTCTT GTGCATTATC GCCTTTTTAC TTTTTATTTT TGGTAGCATT
CGTTGCCTTC TGTGGTTTTG GTGTTGGGTT GACAGGCTTC TAAAATGCAG ACCAGAATTT AAGAATCAGA TCGGTTATAT
TTTTTTCTAA AAACACTGTT CTTGTTGTTG AACCGGTAAA TGGCATGTTA TGTATGATAT GTATTTGGGG GGCGTATATG
TTTAGTGTAC GCAAGTTTTC TGGAATACTA AATATAGTAG TGTTGGTCTA TACTAAATAT GGATTGATTT GGC

>Vigan.04G072700.01
ATGGCTGAGG AACCGGAAAG CACCGTCACC ACTGGCGCCG AAGCCGACCA ATCGTTGCTG GATAAGATAA GCGAGAAGCT
TCACGGTCAC GATTCCTCGT CCTCTTCCGA TTCGGATTCC GAAAAAACCG TCACTTCGTC CGTTAAGGAT AAGATTTTCC
GCCTCTTCGG TAGGCAGAGG CCCGTTCATT CCGTGTTGGG CGCCGGAAAA CCTGCTGACT TGTTATTGTG GAGGAACAAG
AAGATATCTG CTGGCGTGCT TGGCGGAGCC ACTGCTGTTT GGGTCCTGTT TGAGTTGCTT GAGTATCACT TTCTTACTCT
GGTGTGTCAC ATTTTGATAC TGTTGCTCGC AGTTCTGTTC TTGTGGTCCA ATGCCCATAC TTTTATTCAC AAATCAGCAC
CTCGCATTCC AGAAGTTCAT CTTCCCGAGG AGCCATTCCT GCAAGTGGCA TCCGCGTTGA GGATTGAAAT CAACAGGGGA
TTTGCTGTTT TGCATAGTAT TGGTTCTGGA AGAGATTTGA AGAAATTCCT AATGGTTATT GCTGGCGTTT GGATTCTATC
AATTGTGGGG ATCTGGTGCA ACTTCTTGAC CCTCTTCTAC ATAACTTTTA TCTTGTTGTA CACGGCTCCT GTGATATACG
AGAAGTACGA GGATAAGATA GATCCACTTG CAGAGAAGGC AGTTATTGAG ATTAAAAAGC AGTATGCTGT GTTTGATGCT
AAGGTCTTGA GTAAGATCCC GGTGGGTTCT TTAAAAGCTA AGTTATCTTA G

>Vigan.04G072700.01
MAEEPESTVT TGAEADQSLL DKISEKLHGH DSSSSSDSDS EKTVTSSVKD KIFRLFGRQR PVHSVLGAGK PADLLLWRNK
KISAGVLGGA TAVWVLFELL EYHFLTLVCH ILILLLAVLF LWSNAHTFIH KSAPRIPEVH LPEEPFLQVA SALRIEINRG
FAVLHSIGSG RDLKKFLMVI AGVWILSIVG IWCNFLTLFY ITFILLYTAP VIYEKYEDKI DPLAEKAVIE IKKQYAVFDA
KVLSKIPVGS LKAKLS*