GBrowse Details

Vigan.04G074600.01

Basic Information:
Name: Vigan.04G074600.01
Multiple alignment
Variant Information
Position: Chr04:7211991..7215195 (+ strand)
Length: 3205
Functional Information:
Description: Similar to uncharacterized protein. [C6TMD0, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L5 (IPR002132)
Ribosomal protein L5, conserved site (IPR020929)
Ribosomal protein L5, bacterial-type (IPR020930)
Ribosomal protein L5 domain (IPR022803)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.94,14.87,41.26,149.33,21.91,39.74,9.80,24.30
Arabidopsis thaliana homolog: AT4G01310.1
Automatic updates:
Name: NM_001289352 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L5, chloroplastic-like (LOC100818896), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:7211991..7212240 (+ strand)
Length: 250
Type: five_prime_UTR
Position: Chr04:7212241..7212504 (+ strand)
Length: 264
Type: CDS
Position: Chr04:7213130..7213330 (+ strand)
Length: 201
Type: CDS
Position: Chr04:7214600..7214944 (+ strand)
Length: 345
Type: CDS
Position: Chr04:7214945..7215195 (+ strand)
Length: 251
Type: three_prime_UTR


>Vigan.04G074600.01
CACGGTTTGT TTAGTTTTCG ACTCCTTATC CATTCTTGGT TTCTTGCATT TTTTTCCCCC ACACCTTACA CTCATAAAAA
ACACAAATTC CTTGCATAGG CGTTGGTTGG CCAAGATTTT CTCTCATCCC ACGTTGTTGA TCTTCGTAAA TAGGATTCAA
CACAAGGGGC ATTTTTCAAC ACTGCCCTCT AAACCCCTTC CACGCTATCC ATCCATAATC AGCTTAGAGT GTGAGCACTG
AATAACCACC ATGGCCACGG CTCCTTCGCT TCTACACTCA TCCGGGTCCT CATTTTTCGC TCAATTTCGT GCATTTCCAT
TATCTTCTTC CACTTCAGTG TTCCCTCATG TAAAAAGGCA TGGGAATGTG GTGGTGCCTG TGAGGGCCTC TGATTCTGGG
GTTGTGTTGG TGGAGAAATC TGACGCAGAG AAGACCAATA GGCTCAAAAC AGCATACACT GAGAAAATAG TTCCCTTGCT
CGTAGAAGAG TTTTCTTACA CCAACAAGCA CCAGGTGCCT AAAATTGAGA AGATTGTGGT TAACTGTGGT ATTGGAGACG
CTGCACAAAA TTCCAAGGGT TTGGACGCGG CAATAAGTGA TCTAGCAATG ATCACTGGGC AGAGACCTGT GAAGACTCGG
GCTAGGGCTT CTCTTGCCAC ATTTAAGATC AGGGAAGGTC AACCGCTTGG GATTGCTGTA ACACTAAGAG GAAACATTAT
GTACTCATTC CTAGACCGAG TCATCAACTT GGGACTTCCC AGAACAAGAG ATTTCCAAGG TGTGAACTCC AACAGCTTTG
ATGGGCATGG AAATTACAGC ATTGGCGTAA AGGACCAGGG TGTGTTCCCA GAGATCAGAG CTGATGTTGT TGGCAAGCCT
AGGGGAATGG ACATCTGCAT CAACACAACG GCTAACACTG ATAAAGAAGC TCAAAGATTA TTGGCTCTTA TGGGTATGCC
CTTCAGAGAG GGAAGTGGTT CTGTCGGGGC GGCCGGACGG AAAAAGAAGC TTAAGTCTCA TCATTTTGAT TCAAAAAGGG
GAGGAAGAGG AAGGAAGTGA CATAGTTTTG ATGCAAAATC ATAGGACTAA AGTGAGGTTG GGAACCAGAA GAGACTGTGT
TGTATTCCTT GTTTCATTCA GATGTAATGT TAATAAGTTA CTGATTCTTT TTGTATGAAG GATTTTCATG CTTTAAACTA
ATGTCTCTGA AAGCTTGTGA TCATGCAGAT TCTTCTTTCT AATGCTTATC CATTTGTTTA CTGATTATTT AGCAATGGTC
CTAAACTTGT CCATAGAGAC AAGAATACTT C

>Vigan.04G074600.01
ATGGCCACGG CTCCTTCGCT TCTACACTCA TCCGGGTCCT CATTTTTCGC TCAATTTCGT GCATTTCCAT TATCTTCTTC
CACTTCAGTG TTCCCTCATG TAAAAAGGCA TGGGAATGTG GTGGTGCCTG TGAGGGCCTC TGATTCTGGG GTTGTGTTGG
TGGAGAAATC TGACGCAGAG AAGACCAATA GGCTCAAAAC AGCATACACT GAGAAAATAG TTCCCTTGCT CGTAGAAGAG
TTTTCTTACA CCAACAAGCA CCAGGTGCCT AAAATTGAGA AGATTGTGGT TAACTGTGGT ATTGGAGACG CTGCACAAAA
TTCCAAGGGT TTGGACGCGG CAATAAGTGA TCTAGCAATG ATCACTGGGC AGAGACCTGT GAAGACTCGG GCTAGGGCTT
CTCTTGCCAC ATTTAAGATC AGGGAAGGTC AACCGCTTGG GATTGCTGTA ACACTAAGAG GAAACATTAT GTACTCATTC
CTAGACCGAG TCATCAACTT GGGACTTCCC AGAACAAGAG ATTTCCAAGG TGTGAACTCC AACAGCTTTG ATGGGCATGG
AAATTACAGC ATTGGCGTAA AGGACCAGGG TGTGTTCCCA GAGATCAGAG CTGATGTTGT TGGCAAGCCT AGGGGAATGG
ACATCTGCAT CAACACAACG GCTAACACTG ATAAAGAAGC TCAAAGATTA TTGGCTCTTA TGGGTATGCC CTTCAGAGAG
GGAAGTGGTT CTGTCGGGGC GGCCGGACGG AAAAAGAAGC TTAAGTCTCA TCATTTTGAT TCAAAAAGGG GAGGAAGAGG
AAGGAAGTGA 

>Vigan.04G074600.01
MATAPSLLHS SGSSFFAQFR AFPLSSSTSV FPHVKRHGNV VVPVRASDSG VVLVEKSDAE KTNRLKTAYT EKIVPLLVEE
FSYTNKHQVP KIEKIVVNCG IGDAAQNSKG LDAAISDLAM ITGQRPVKTR ARASLATFKI REGQPLGIAV TLRGNIMYSF
LDRVINLGLP RTRDFQGVNS NSFDGHGNYS IGVKDQGVFP EIRADVVGKP RGMDICINTT ANTDKEAQRL LALMGMPFRE
GSGSVGAAGR KKKLKSHHFD SKRGGRGRK*