GBrowse Details

Vigan.04G077300.01

Basic Information:
Name: Vigan.04G077300.01
Multiple alignment
Variant Information
Position: Chr04:7510661..7513374 (+ strand)
Length: 2714
Functional Information:
Description: Similar to Uncharacterized protein. [I1L6I4, Glycine max]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:224.33,70.02,44.82,48.40,32.76,52.42,59.82,26.60
Automatic updates:
Name: NM_001255889 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugating enzyme E2 5-like (LOC100805356), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:7510661..7510783 (+ strand)
Length: 123
Type: five_prime_UTR
Position: Chr04:7510784..7510827 (+ strand)
Length: 44
Type: CDS
Position: Chr04:7510937..7511016 (+ strand)
Length: 80
Type: CDS
Position: Chr04:7511553..7511667 (+ strand)
Length: 115
Type: CDS
Position: Chr04:7511768..7511820 (+ strand)
Length: 53
Type: CDS
Position: Chr04:7511925..7512053 (+ strand)
Length: 129
Type: CDS
Position: Chr04:7512936..7513066 (+ strand)
Length: 131
Type: CDS
Position: Chr04:7513067..7513374 (+ strand)
Length: 308
Type: three_prime_UTR


>Vigan.04G077300.01
TTTTACTTGT TTTCAGCTTG CACAAGAGTC TCCAATCTTA ACTTCTCTCT CCACTTGCCA AAGGAAAGGC TAAAGAGGAG
AAGGAAAAAG GCAAAGCAAG AGCCGACCAA CACACACAGA ACCATGTCTT CCCCAAGCAA GCGCAGAGAG ATGGACTTGA
TGAAACTGAT GATGAGTGAT TACAAGGTGG AGATGATTAA TGATGGAATG CAAGAATTTT ATGTGCAATT CCATGGACCC
AATGGCAGTC CTTATCATGG TGGTGTGTGG AAAGTGAGAG TTGAGTTGCC TGATGCTTAT CCTTATAAAT CTCCTTCCAT
TGGCTTTGTC AACAAGATCT ATCACCCAAA TGTTGATGAG ATGTCAGGAT CAGTTTGTCT GGATGTTATC AATCAAACCT
GGAGTCCCAT GTTTGATCTT GTTAATGTGT TTGAGGTGTT TCTACCACAA CTTCTGCTGT ATCCCAATCC ATCAGACCCC
TTGAATGGAG AAGCTGCAGC TTTAATGATG CGTGACCGAT CTGCTTATGA GATAAGGGTT AAAGAGTACT GTGAGAAGTA
TGCTAAGCCT GAAGACATAG GGGAAGTCAC AGAAGAGAAA TCCAGTGATG AGGAAATGAG TGAAGATGAA TCTGATTCTA
GTGATGAGCA GGTTGTTGGT AAAGCAGACC CCTAGCTTTG CATGCATGTC ATGTTCTTAA CATTGTATTT TATCTGTAAA
TGATGTTCTA TTTGTGTTAA TTTACCTCAC CACATATGAA CCTGTTATGG ATAAGGGGGA AAAGTCTCCT TCCTTCTATT
CTAGTTTCCT GTCGCTGTAA ATAAAGTACC ATTGATTTCC TGATGCAATT CTATTTCATG TTTAGCTCAC TTTCAAGTCA
GTGTGCTGTT TAGCCATGAT AATTTAATTA AGAATGTAGC ACAACATGAC ACTCTTTGTA TTGGGTTAAT GTTTCTTCCA
ATAAATTATG TGAATTTGTT CTC

>Vigan.04G077300.01
ATGTCTTCCC CAAGCAAGCG CAGAGAGATG GACTTGATGA AACTGATGAT GAGTGATTAC AAGGTGGAGA TGATTAATGA
TGGAATGCAA GAATTTTATG TGCAATTCCA TGGACCCAAT GGCAGTCCTT ATCATGGTGG TGTGTGGAAA GTGAGAGTTG
AGTTGCCTGA TGCTTATCCT TATAAATCTC CTTCCATTGG CTTTGTCAAC AAGATCTATC ACCCAAATGT TGATGAGATG
TCAGGATCAG TTTGTCTGGA TGTTATCAAT CAAACCTGGA GTCCCATGTT TGATCTTGTT AATGTGTTTG AGGTGTTTCT
ACCACAACTT CTGCTGTATC CCAATCCATC AGACCCCTTG AATGGAGAAG CTGCAGCTTT AATGATGCGT GACCGATCTG
CTTATGAGAT AAGGGTTAAA GAGTACTGTG AGAAGTATGC TAAGCCTGAA GACATAGGGG AAGTCACAGA AGAGAAATCC
AGTGATGAGG AAATGAGTGA AGATGAATCT GATTCTAGTG ATGAGCAGGT TGTTGGTAAA GCAGACCCCT AG

>Vigan.04G077300.01
MSSPSKRREM DLMKLMMSDY KVEMINDGMQ EFYVQFHGPN GSPYHGGVWK VRVELPDAYP YKSPSIGFVN KIYHPNVDEM
SGSVCLDVIN QTWSPMFDLV NVFEVFLPQL LLYPNPSDPL NGEAAALMMR DRSAYEIRVK EYCEKYAKPE DIGEVTEEKS
SDEEMSEDES DSSDEQVVGK ADP*