GBrowse Details

Vigan.04G078000.01

Basic Information:
Name: Vigan.04G078000.01
Multiple alignment
Variant Information
Position: Chr04:7562623..7566141 (- strand)
Length: 3519
Functional Information:
Description: Similar to uncharacterized LOC101221288. [XP_004171875.1, Cucumis sativus]
InterPro: HAD-like domain (IPR023214)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.36,0.00,1.24,44.76,0.03,0.46,0.27,1.24
Automatic updates:
Name: NM_001289392 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100809469 (LOC100809469), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:7562623..7562788 (- strand)
Length: 166
Type: three_prime_UTR
Position: Chr04:7562789..7562889 (- strand)
Length: 101
Type: CDS
Position: Chr04:7563014..7563090 (- strand)
Length: 77
Type: CDS
Position: Chr04:7563171..7563233 (- strand)
Length: 63
Type: CDS
Position: Chr04:7563368..7563447 (- strand)
Length: 80
Type: CDS
Position: Chr04:7563524..7563593 (- strand)
Length: 70
Type: CDS
Position: Chr04:7563801..7563967 (- strand)
Length: 167
Type: CDS
Position: Chr04:7564312..7564401 (- strand)
Length: 90
Type: CDS
Position: Chr04:7565737..7565817 (- strand)
Length: 81
Type: CDS
Position: Chr04:7565955..7566032 (- strand)
Length: 78
Type: CDS
Position: Chr04:7566033..7566141 (- strand)
Length: 109
Type: five_prime_UTR


>Vigan.04G078000.01
GTTGGTATCA TAGAATTCAA TCCTGTTTGG ATGGTGGGTA ATTGCATAAC AAGAGTACAA TATAATAATA TTCAGATAAG
TTTAGTAACG TTGGAAGGAA GACAGGGAAA TGGGTCACCT CTATGCTTTG GACTTTGATG GAGTTATATG TGACAGTTGT
GGGGAGACTG CAATCTCTGC TCTCAAGGCT GCCAAGTTGA GATGGCCTTC CTTGTTTGAT GGTGTGGATT CAGCCATAGA
AGATTGGATT GTTGATCAGA TGATTACAGT ACGTCCAGTT GTTGAAACTG GATATGAAAC TCTTCTACTT GTAAGGTTGT
TGCTTGAGAC TAGGGTTCCT TCCATCAGGA AGTCTTCGGT TTCAAAGGGG CTTACAGTTG AGGATATACT GGAGAATTGG
TTCAAATTGA AACCTGTTAT TATGGAAGAA TGGAATGAGA ATAGAGAAGA TCTGGTAGAC CTTTTTGGGA AAGTCAGAGA
TGAATGGCTG GAGAGGGATT TCACTGGTTG GATTGGAGCA AACAGACTAT ATCCTGGTGT TGCTGATGCA TTGAGATTTG
CAAGCTCAAA AGTGTACATT GTCACCACAA AACAGAGCCG CTTTGCCGAT GCTTTACTAA GAGAGCTTGC TGGAGTCACT
ATACCACCAG AACGATTATA TGGTTTAGGA ACTGGTCCCA AGGTAAAAGT GTTAAAGAAG CTTCAGGAAA TGGCAGAACA
CAAAGGGCTG ACACTACACT TTGTGGAAGA TAGGCTTGCA ACCCTAAAGA ATGTCATCAA AGAACCCGAG TTGGATAACT
GGAATTTGTA TCTGGTGAAT TGGGGGTTCA ACACTCAAAA AGAGAGAGAA GAAGCAGCAG CCAACCCTAG GATTCAAGTT
CTTGAGCTTT TTGACTTCAG TAGCAAGCTG GTATAGTAGT CTGACTTCGT TAAATTGTCA AACATTGGAT TAAATATTTA
CTACCATTTC ATTCCTTTAT GAGCAACGAC AAATTGCTAC ACTTGAAAAT TCATGAGGTA TTTTTAACTA GTTTCCTTTC
TTATTAAACT GCATCACTCG TGTCCTATAA GTGAGTTGGA AG

>Vigan.04G078000.01
ATGGGTCACC TCTATGCTTT GGACTTTGAT GGAGTTATAT GTGACAGTTG TGGGGAGACT GCAATCTCTG CTCTCAAGGC
TGCCAAGTTG AGATGGCCTT CCTTGTTTGA TGGTGTGGAT TCAGCCATAG AAGATTGGAT TGTTGATCAG ATGATTACAG
TACGTCCAGT TGTTGAAACT GGATATGAAA CTCTTCTACT TGTAAGGTTG TTGCTTGAGA CTAGGGTTCC TTCCATCAGG
AAGTCTTCGG TTTCAAAGGG GCTTACAGTT GAGGATATAC TGGAGAATTG GTTCAAATTG AAACCTGTTA TTATGGAAGA
ATGGAATGAG AATAGAGAAG ATCTGGTAGA CCTTTTTGGG AAAGTCAGAG ATGAATGGCT GGAGAGGGAT TTCACTGGTT
GGATTGGAGC AAACAGACTA TATCCTGGTG TTGCTGATGC ATTGAGATTT GCAAGCTCAA AAGTGTACAT TGTCACCACA
AAACAGAGCC GCTTTGCCGA TGCTTTACTA AGAGAGCTTG CTGGAGTCAC TATACCACCA GAACGATTAT ATGGTTTAGG
AACTGGTCCC AAGGTAAAAG TGTTAAAGAA GCTTCAGGAA ATGGCAGAAC ACAAAGGGCT GACACTACAC TTTGTGGAAG
ATAGGCTTGC AACCCTAAAG AATGTCATCA AAGAACCCGA GTTGGATAAC TGGAATTTGT ATCTGGTGAA TTGGGGGTTC
AACACTCAAA AAGAGAGAGA AGAAGCAGCA GCCAACCCTA GGATTCAAGT TCTTGAGCTT TTTGACTTCA GTAGCAAGCT
GGTATAG

>Vigan.04G078000.01
MGHLYALDFD GVICDSCGET AISALKAAKL RWPSLFDGVD SAIEDWIVDQ MITVRPVVET GYETLLLVRL LLETRVPSIR
KSSVSKGLTV EDILENWFKL KPVIMEEWNE NREDLVDLFG KVRDEWLERD FTGWIGANRL YPGVADALRF ASSKVYIVTT
KQSRFADALL RELAGVTIPP ERLYGLGTGP KVKVLKKLQE MAEHKGLTLH FVEDRLATLK NVIKEPELDN WNLYLVNWGF
NTQKEREEAA ANPRIQVLEL FDFSSKLV*