GBrowse Details

Vigan.04G086200.01

Basic Information:
Name: Vigan.04G086200.01
Multiple alignment
Variant Information
Position: Chr04:8881566..8885558 (+ strand)
Length: 3993
Functional Information:
Description: Similar to Bifunctional protein folD. [G7L3I6, Medicago truncatula]
GO: Biological Process: folic acid-containing compound biosynthetic process (GO:0009396)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: methylenetetrahydrofolate dehydrogenase (NADP+) activity (GO:0004488)
InterPro: Tetrahydrofolate dehydrogenase/cyclohydrolase (IPR000672)
NAD(P)-binding domain (IPR016040)
Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (IPR020630)
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (IPR020631)
Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (IPR020867)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.29,16.75,9.81,7.31,162.34,20.10,8.05,5.51
Arabidopsis thaliana homolog: AT4G00620.1
Automatic updates:
Name: NM_001252866 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bifunctional protein FolD-like (LOC100819231), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: NM_001255068 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bifunctional protein FolD-like (LOC100797215), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:8881566..8881782 (+ strand)
Length: 217
Type: five_prime_UTR
Position: Chr04:8881783..8881915 (+ strand)
Length: 133
Type: CDS
Position: Chr04:8883096..8883421 (+ strand)
Length: 326
Type: CDS
Position: Chr04:8883644..8883880 (+ strand)
Length: 237
Type: CDS
Position: Chr04:8884020..8884187 (+ strand)
Length: 168
Type: CDS
Position: Chr04:8884340..8884510 (+ strand)
Length: 171
Type: CDS
Position: Chr04:8884511..8885558 (+ strand)
Length: 1048
Type: three_prime_UTR


>Vigan.04G086200.01
CTTAAGAAGT CATAGTAGCC AAAGCATGAA TGCTATGCCG GATTTAAGTC TTAAAAAATA CAGAGAATCT GTCCTCTGAG
AACACCCAAT TCGTAGCATT GTCCTTGTCG TTGTCACTCT CTTTGTGCAA ATCAAAACGC GGAGAAACAT AGCAAAGCAC
AACAGAACTT ATAGGTTGCT GAATCTTTGT TTAGGGTTTG GTCACCGAAT CTCAACAATG GCTTCTTCTT TGTTCTTCAC
TCATTCCCAT TGCTACTCTT CTTCTACTTC TCTTGTTTTT CGCCTCCACC GTCAACTGGG TGTGGCTCCC ACCTCTCTCC
GGTTATCATC CTCCCATGTT GCCAACGTTG CTGCCATGGC TATGGATTCT TCTGCTAAGG TGATTGATGG AAAAGCTGTA
GCGAAGCAAA TCAGAGACGA GATAACAGCT GAGGTCTCCA GGATGAGAGA AGCTACTGGT GTGATTCCAG GATTAGCTGT
AATTCTTGTA GGAGATAGGA AGGATTCTGC AACTTATGTG CGTAACAAGA AGAAGGCTTG TGAATCTGTT GGAATTAATT
CTTTGGAAGC TAATCTGCCT GAGGATTCCA CAGAAGAGGA AGTTTTGAAC TATATTTCAG GCTACAATGA TGATCCGTCA
GTTCATGGCA TCCTAGTTCA GTTGCCCTTG CCTTCGCATA TGAATGAGCA AAACATCTTG AATGCTGTTA GAATTGAGAA
GGATGTAGAT GGTTTTCATC CATTAAATAT CGGCCGTCTT GCCATGCGTG GAAGAGACCC TCTATTTGTT CCCTGTACAC
CAAAGGGATG CATAGAGCTA CTGCACAGAT ACAATATTTC CATTAAAGGA AAGAGGGCTG TTGTGATTGG TCGGAGCAAT
ATTGTTGGAA TGCCAGCTGC TCTATTGCTG CAAAGGGAAG ATGCTACTGT CAGTATTGTC CATTCCAGAA CCAGTAACCC
TGAAGAGATC ATAAGACAGG CAGATATTAT CATTTCTGCT GTTGGGAAAG CAAACATGGT GAGGGGAAGC TGGATAAAGC
CTGGTGCAGT CATCATTGAC GTTGGAATCA ACCCAGTAGA TGATCCAAAT AGCCCCCGAG GTTATAAACT GGTAGGAGAT
GTTTTTTACG AAGAAGCCAT ACAAGTTGCC TCTGCCGTTA CACCAGTCCC TGGAGGAGTT GGTCCAATGA CCATAGCAAT
GCTTCTCCAA AATACACTCA TCTCTGCAAA GAGGGTGCAC AATTTTGAAT GACATTGTGA AAAGGGTCTA TACTTTTTGT
TTATGGGATT CTTGGATTTT AAGGTAGCTT TTTTCAACAT TTGTGAAAGG GGGGTTTGAG TTTTTTCCTT AAGCCAAAAT
AATAAGAGAA AATGTTGCTT AGGATGACAG TGTAAAACTT TTCCTTTCCT ATAGTTGCAT CATGATGCAA AAATCGTGGC
TGCAAAAATA AAAATTGATT GGGAAAACAT ACAGCAATCA CATAAGAAAT CATGATATAA AAATGCTTGT GGATGGCCTT
TAAGTTGGTG CATTTTGCTT GAAATCCCAT AATACATTTT GGAGCGGAAT ATATTACACT ATGCGTAGAT GCACATGAAG
GATGAAGCCA TACACACTAA TAATGGTAAG TACGCTGGAT CATAATCAGA TAAAGAACAA AATATTCTTA AATGGGAGGC
ATTGATACTA TTAATACAAT TATTTGATGG ATGACTTTGC TTCAATGTTG TTTCGACCAA AGTTTGAGAG TTTATAACAA
TTTAAGCATC CTACTTAATT TAGACATGTT GACCGGTTTT ATTTTAACTT TGGATTGATT GTTTTAACTC TTTTTTCTCT
AACATAAATA CCCTTTCGCG AGAAGAATGC TACTTGGTAG AATGATCTTT GAGTAGTCTC AATATCAAAT TTTACGGAAT
GATAAACTTA TTATTAAACC AAAATGTGAA CAGACAATCA AACTACAGAG CTTTGATTAC AGCCTATATG GTCCCATGTA
GAACATGTAC GGTTACACTT CCTCTGTAAT TCTCAATAAA AGTACGTTTC TGCAAATATC TTTAATTTTC TAGGAACAGA
GATTTACACT GCTTCACAGT ATCATCTGGG CTTGTAACTG AAAAGAAAAA TACAAAGTGA TAAGGATCAC ATAATCAATG
CAAATGACAA TGATTCTTCG TTATTTTACC CTACTTTGGC TTGGTTGTTA ACTTTAGTTG GTTCATTTAA GAAAAAAATA
TACCAAAATT TTGAAAAAGT TTACTATAAT TATTATTTTT TGATATTCAG AAAAAACGTA 

>Vigan.04G086200.01
ATGGCTTCTT CTTTGTTCTT CACTCATTCC CATTGCTACT CTTCTTCTAC TTCTCTTGTT TTTCGCCTCC ACCGTCAACT
GGGTGTGGCT CCCACCTCTC TCCGGTTATC ATCCTCCCAT GTTGCCAACG TTGCTGCCAT GGCTATGGAT TCTTCTGCTA
AGGTGATTGA TGGAAAAGCT GTAGCGAAGC AAATCAGAGA CGAGATAACA GCTGAGGTCT CCAGGATGAG AGAAGCTACT
GGTGTGATTC CAGGATTAGC TGTAATTCTT GTAGGAGATA GGAAGGATTC TGCAACTTAT GTGCGTAACA AGAAGAAGGC
TTGTGAATCT GTTGGAATTA ATTCTTTGGA AGCTAATCTG CCTGAGGATT CCACAGAAGA GGAAGTTTTG AACTATATTT
CAGGCTACAA TGATGATCCG TCAGTTCATG GCATCCTAGT TCAGTTGCCC TTGCCTTCGC ATATGAATGA GCAAAACATC
TTGAATGCTG TTAGAATTGA GAAGGATGTA GATGGTTTTC ATCCATTAAA TATCGGCCGT CTTGCCATGC GTGGAAGAGA
CCCTCTATTT GTTCCCTGTA CACCAAAGGG ATGCATAGAG CTACTGCACA GATACAATAT TTCCATTAAA GGAAAGAGGG
CTGTTGTGAT TGGTCGGAGC AATATTGTTG GAATGCCAGC TGCTCTATTG CTGCAAAGGG AAGATGCTAC TGTCAGTATT
GTCCATTCCA GAACCAGTAA CCCTGAAGAG ATCATAAGAC AGGCAGATAT TATCATTTCT GCTGTTGGGA AAGCAAACAT
GGTGAGGGGA AGCTGGATAA AGCCTGGTGC AGTCATCATT GACGTTGGAA TCAACCCAGT AGATGATCCA AATAGCCCCC
GAGGTTATAA ACTGGTAGGA GATGTTTTTT ACGAAGAAGC CATACAAGTT GCCTCTGCCG TTACACCAGT CCCTGGAGGA
GTTGGTCCAA TGACCATAGC AATGCTTCTC CAAAATACAC TCATCTCTGC AAAGAGGGTG CACAATTTTG AATGA

>Vigan.04G086200.01
MASSLFFTHS HCYSSSTSLV FRLHRQLGVA PTSLRLSSSH VANVAAMAMD SSAKVIDGKA VAKQIRDEIT AEVSRMREAT
GVIPGLAVIL VGDRKDSATY VRNKKKACES VGINSLEANL PEDSTEEEVL NYISGYNDDP SVHGILVQLP LPSHMNEQNI
LNAVRIEKDV DGFHPLNIGR LAMRGRDPLF VPCTPKGCIE LLHRYNISIK GKRAVVIGRS NIVGMPAALL LQREDATVSI
VHSRTSNPEE IIRQADIIIS AVGKANMVRG SWIKPGAVII DVGINPVDDP NSPRGYKLVG DVFYEEAIQV ASAVTPVPGG
VGPMTIAMLL QNTLISAKRV HNFE*