VIGGS:GBrowse

Vigan.04G088200.01

Basic Information:

Name:	Vigan.04G088200.01 Multiple alignment Variant Information
Position:	Chr04:8984423..8989731 (- strand)
Length:	5309

Functional Information:

Description:	Similar to uncharacterized LOC101205849. [XP_004165121.1, Cucumis sativus]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:34.28,39.62,95.23,56.68,126.78,163.53,83.67,61.37
Arabidopsis thaliana homolog:	AT4G00585.1

Automatic updates:

Name:	NM_001250884 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306629 (LOC100306629), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:8984423..8984818 (- strand)
Length:	396
Type:	three_prime_UTR

Position:	Chr04:8984819..8984896 (- strand)
Length:	78
Type:	CDS

Position:	Chr04:8989367..8989543 (- strand)
Length:	177
Type:	CDS

Position:	Chr04:8989544..8989731 (- strand)
Length:	188
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G088200.01
TGAAGAGAGG GGAGAGTAGC ATAAGGCAGT TAGACACTCC CGCAGGGGAT CTCAGCCTGA ACGAAACGAA ACCTTGGTTC
CTCTCTCTTG TCCTCACAAC TTTGTTCGTG CGTGTATCCC AAAGAGAGAG AGTGAGCGAG TGAGTAGGGT TTCAAATTTT
CAGCCAGACC AAATCGGAAT CGGAAGAAAT GGGCGGTGGA GGCGGTGATC ATGGCCATGG AAACGGCGAT TTCAGGACCA
AGGTGTGGAG TATGACAGGT GGCCCTTACT GTCGTCCCAA ACACTGGAAG CGAAACACTG CCATTGCCAT GTTCGGCGTC
GTCCTCGTCT GCATCCCCAT CGCCATGAAA TCCGCTGAAC TTGAGCAACG ACCGCATCAT CCTGTTCGCC CCATCCCTTC
TCAACTCTGG TGCAAGAACT TTGGAACTAA AGATTATGAA TGAACGGAAT AACAATTGCA TCACTGGTGT GGGAGTCCAC
ATCATGTCAA GCAAACATTA TTTGTTATAT GCTCTAAGAA TATGAACAGC CTTAAAGAGT TGCTGTTGTT GATGTTATCC
AAGACTTTGA TCTAGCATCA AGTAGTGACA TTATTTTTTG GCTATATTTG ATGGACATCC ATTTTAGAAA TTATGAAATT
AAATAAGTGC TATTTTCTGA AGTTTTGATT CGAGAGCCTG TTGAAACCGA TATTACTCGT TACTGTAATA ATTGTAATTG
TGCTTTTATC AATTTGCCTA TACCTTCTCG CATTAGTTCT TTCCCCATTT AAATGCCATG TAGAAAAAGA GAAAGTAGAA
TTTTATGTTT TTAATGGAAA AGTTGAAGTT ATTCCAACC

[show][hide][copy]CDS

>Vigan.04G088200.01
ATGGGCGGTG GAGGCGGTGA TCATGGCCAT GGAAACGGCG ATTTCAGGAC CAAGGTGTGG AGTATGACAG GTGGCCCTTA
CTGTCGTCCC AAACACTGGA AGCGAAACAC TGCCATTGCC ATGTTCGGCG TCGTCCTCGT CTGCATCCCC ATCGCCATGA
AATCCGCTGA ACTTGAGCAA CGACCGCATC ATCCTGTTCG CCCCATCCCT TCTCAACTCT GGTGCAAGAA CTTTGGAACT
AAAGATTATG AATGA

[show][hide][copy]PROTEIN

>Vigan.04G088200.01
MGGGGGDHGH GNGDFRTKVW SMTGGPYCRP KHWKRNTAIA MFGVVLVCIP IAMKSAELEQ RPHHPVRPIP SQLWCKNFGT
KDYE*