GBrowse Details

Vigan.04G100200.01

Basic Information:
Name: Vigan.04G100200.01
Multiple alignment
Variant Information
Position: Chr04:10288763..10294715 (+ strand)
Length: 5953
Functional Information:
Description: Similar to Uncharacterized protein. [K7MU39, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: lipid binding (GO:0008289)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Homeobox domain (IPR001356)
START domain (IPR002913)
Homeodomain-like (IPR009057)
Homeobox, conserved site (IPR017970)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.46,19.44,17.58,24.20,0.34,7.23,0.69,10.13
Arabidopsis thaliana homolog: AT1G05230.1, AT1G17920.1, AT1G73360.1, AT1G79840.2, AT2G32370.1, AT3G61150.1, AT4G00730.1, AT4G04890.1, AT4G21750.1, AT5G46880.1, AT5G52170.1
Automatic updates:
Name: KT031166 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_121 homeodomain/HOMEOBOX transcription factor (Glyma09g40130.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:10288763..10289063 (+ strand)
Length: 301
Type: five_prime_UTR
Position: Chr04:10289064..10289255 (+ strand)
Length: 192
Type: CDS
Position: Chr04:10289379..10289596 (+ strand)
Length: 218
Type: CDS
Position: Chr04:10289716..10289833 (+ strand)
Length: 118
Type: CDS
Position: Chr04:10289950..10290645 (+ strand)
Length: 696
Type: CDS
Position: Chr04:10290923..10291024 (+ strand)
Length: 102
Type: CDS
Position: Chr04:10291112..10291324 (+ strand)
Length: 213
Type: CDS
Position: Chr04:10292634..10292808 (+ strand)
Length: 175
Type: CDS
Position: Chr04:10292909..10293276 (+ strand)
Length: 368
Type: CDS
Position: Chr04:10293857..10294228 (+ strand)
Length: 372
Type: CDS
Position: Chr04:10294229..10294715 (+ strand)
Length: 487
Type: three_prime_UTR


>Vigan.04G100200.01
ATTTATTTAT ATTTTCCCTG GTTTCAAAAG GTTCTTTTTT GATTGCGCTC TCAGGTATAT AAGGCAGATT CTGAGAGACC
CATTTCATCT TTTGTGGTGC TACATGGCTG GGAAATTCTG GGGTTGGACG AATCAATCGA CGCGAGGATT AAAAGTTTCT
GCGACAAGGC TGAGTCATTA GTGGCAGCTT GAGTTTTTCA GAGGGGCTTT GAGTAGTAGC AGTTTCTGTG GGGGGTGTGC
TTGTTTGATT GGCGAAAGGA AGAAGAGAAA GAGAAAAAGA AAAGCAAAAG TGGCTACTTT GATGAGTTTT GGGGGGTTTC
TTGAGGTCAA ACAAAGTGGT GGAGGGGGTA GGATCGTATC AGATATTCCT TACAGCAACG GTTCCAACCA CAGCAACGAT
ATAATGCCCT CTGGTGCAAT CTCGCAGCCT CGTTTAGCCA GTCCTACGTT GGCCAAATCC ATGTTTAACT CTCCTGGCCT
TTCTCTTGCG CTTCAAAGTG ATGTCGACGG ACAAGGGGAT ATGAACAGAT TAATGCCCGA GAATTTTGAG CAAAATGGGT
TGAGAAGGAG CCGGGAAGAG GAGCATGAAA GCAGATCTGG CAGTGATAAC ATGGATGGAG CTTCTGGTGA TGATTTTGAT
GCCGCCGACA ACCCACCAAG AAAAAAACGT TATCACCGAC ACACTCCTCA GCAAATTCAA GAGCTTGAAG CGCTTTTCAA
GGAGTGTCCT CACCCGGATG AGAAGCAAAG GCTTGAACTC AGCAGAAGGC TGAATTTGGA AACGAGGCAA GTAAAGTTTT
GGTTCCAAAA TCGAAGAACA CAAATGAAGA CACAATTGGA ACGGCACGAG AACTCGCTGC TAAGGCAAGA GAATGACAAG
CTTAGAGCGG AGAACATGTC TATGAGGGAG GCTATGAGAA ATCCTATGTG CTCAAACTGT GGTGGTCCTG CAATGATTGG
TGAGATTTCA CTTGAAGAAC AGCATCTCAG GATCGAGAAT GCTAGGTTGA AGGATGAATT AGACCGTGTT TGTGCACTCG
CTGGCAAGTT TTTGGGTCGC CCCATTTCTT CTTTAACAAG CTCAATTGGG CCTCCATTGC CAAACTCAAG CTTGGAGCTT
GGGGTTGGGA GCAATGGTTT TGGAGGTTTG AGCACTGTGC CTGCAACATT GCCTGATTTT GGGGTGGGGA TATCAAGCCC
CTTAGCTATG ATGTCACCTT CAACTAGACC AACTGCAACA TCAACTGTGG TGACTGCTGG GCTTGACAGG TCAGTGGAGA
GGTCTATTGT TTTGGAACTT GCTTTGGCTG CAATGGATGA GCTGGTGAAG ATGGCTCAGA CCGGGGAGCC TCTTTGGATC
AGGAGTTTGG AAGGGGGAAG AGAAATTCTC AACTATGAGG AGTACACAAG GACAATGACA CCTTGCATTG GTTTGAGACC
CAATGGTTTT GTCACCGAGG CCTCTAGACA AACTGGCATG GTCATCATAA ACAGCTTGGC TCTTGTTGAA ACATTAATGG
ACTCAAATCG ATGGTCAGAG ATGTTCCCTT GTATGATTGC TAGAACCTCA ACCGCTGAAG TTATATCTAA TGGAATAAAT
GGAACTAGGA ATGGTGCCCT TCAGCTTATG CATGCTGAAC TTCAAGTCCT TTCGCCCTTG GTTCCTGTTC GTGAGGTCAA
TTTTCTACGC TTTTGCAAGC AGCACGCAGA GGGCTTGTGG GCAGTGGTGG ATGTGTCCAT AGACACCATC CGAGAAACTT
CTGGTGCACC CACTTTTGTG AACTGTAGGA GGCTTCCTTC TGGTTGCGTA GTGCAAGATA TGCCAAATGG TTACTCTAAG
GTGACATGGG TGGAACATGC AGAATACGAC GAAAGCCAAG TTCACCAGCT GTACCGACCC TTGTTGAGCT CAGGCACGGG
GTTTGGTGCA CAACGTTGGG TTGCCACCCT TCAACGCCAA TGCGAGTGCT TAGCCATTCT AATGTCCTCA GCAGTTCCCT
CTAGAGAACA TTCAGCAATA AGCTCAGGTG GAAGGAGGAG CATGCTGAAG CTAGCACAAC GCATGACGAA CAATTTCTGT
GCTGGAGTTT GTGCCTCCAC GGTGCACAAG TGGAACAAGC TGAACGCGGG GAACGTGGGG GAGGACGTGA GGGTGATGAC
AAGGAAGAGC GTGGACGACC CCGGCGAGCC GCCGGGTATT GTTCTCAGCG CAGCCACCTC AGTGTGGCTG CCGGTGTCGC
CCCAAAGACT TTTCGACTTC CTGCGCGACG AGCGGCTCCG GAGTGAGTGG GACATCCTCT CGAACGGTGG ACCCATGCAA
GAGATGGCTC ACATTGCCAA GGGACAAGAC CATGCTAACT GTGTCTCCCT CCTCAGAGCC AGTGCTATGA ATGCGAACCA
GAGCAGCATG TTGATTTTGC AGGAGACGTG CACCGACGCG TCGGGGTCGC TTGTGGTGTA CGCGCCGGTG GACATTCCCG
CAATGCACGT GGTGATGAAC GGCGGCGACT CTGCCTACGT GGCGCTTCTC CCGTCGGGGT TCGCCATCGT CCCGGATGGA
TCCGCGGCTG GCGGAGAGCA ACACGGGGGC GCGTCGCAAA AGAGGACGGG TGGATGTCTT CTGACGGTGG CGTTCCAGAT
TCTCGTGAAC AGCCTCCCGA CGGCGAAGCT GACGGTGGAG TCGGTGGAGA CCGTGAACAA CCTCATCTCG TGCACAGTGC
AGAAGATAAA AGCAGCGCTT CACAGCGAGA GTTGAGTGTC ACGGGCGCCT CACGTGACTT GTTTATTATT ATTATTATTA
TTATCATTAC TATTATTTTG TTTGGTTTTG GGGATTAGTT CAAATTTGTT GTAGCTAAAA GTTGCGATAG TGGCGCGTGT
GAATGACGCG AGGGGTGGGG GTGTTGAGTC AAGAACGAAC CGCGCGTGGG TGTGAAAACT CCTTGCAAGG TGTCGAGGGT
CCGAGGCTCG TTCGGGTCGG GTTAGGATCT TTAACACATG GCAGGGGTGG TGGTTCGGGT ATTGACTCGG GTCGACCCTT
TGTCTGCTCT ACTAGCAGTA GCAGCAGAAG AAAAGAAAAG AGAAAAAGGA ACAAAATTGT GTTTCTGGTT ATTTTTATCT
GTATTGACTT GAGAGTTTGC TAGAATTGGA TCTAGTAGTT TGTTGCATAT GATCAAATCA ATAATTTGTT TTCATTTTTT
GACATTTTTA GATCCTATAC CTTTTTCTTT TCTTAATTTT AG

>Vigan.04G100200.01
ATGAGTTTTG GGGGGTTTCT TGAGGTCAAA CAAAGTGGTG GAGGGGGTAG GATCGTATCA GATATTCCTT ACAGCAACGG
TTCCAACCAC AGCAACGATA TAATGCCCTC TGGTGCAATC TCGCAGCCTC GTTTAGCCAG TCCTACGTTG GCCAAATCCA
TGTTTAACTC TCCTGGCCTT TCTCTTGCGC TTCAAAGTGA TGTCGACGGA CAAGGGGATA TGAACAGATT AATGCCCGAG
AATTTTGAGC AAAATGGGTT GAGAAGGAGC CGGGAAGAGG AGCATGAAAG CAGATCTGGC AGTGATAACA TGGATGGAGC
TTCTGGTGAT GATTTTGATG CCGCCGACAA CCCACCAAGA AAAAAACGTT ATCACCGACA CACTCCTCAG CAAATTCAAG
AGCTTGAAGC GCTTTTCAAG GAGTGTCCTC ACCCGGATGA GAAGCAAAGG CTTGAACTCA GCAGAAGGCT GAATTTGGAA
ACGAGGCAAG TAAAGTTTTG GTTCCAAAAT CGAAGAACAC AAATGAAGAC ACAATTGGAA CGGCACGAGA ACTCGCTGCT
AAGGCAAGAG AATGACAAGC TTAGAGCGGA GAACATGTCT ATGAGGGAGG CTATGAGAAA TCCTATGTGC TCAAACTGTG
GTGGTCCTGC AATGATTGGT GAGATTTCAC TTGAAGAACA GCATCTCAGG ATCGAGAATG CTAGGTTGAA GGATGAATTA
GACCGTGTTT GTGCACTCGC TGGCAAGTTT TTGGGTCGCC CCATTTCTTC TTTAACAAGC TCAATTGGGC CTCCATTGCC
AAACTCAAGC TTGGAGCTTG GGGTTGGGAG CAATGGTTTT GGAGGTTTGA GCACTGTGCC TGCAACATTG CCTGATTTTG
GGGTGGGGAT ATCAAGCCCC TTAGCTATGA TGTCACCTTC AACTAGACCA ACTGCAACAT CAACTGTGGT GACTGCTGGG
CTTGACAGGT CAGTGGAGAG GTCTATTGTT TTGGAACTTG CTTTGGCTGC AATGGATGAG CTGGTGAAGA TGGCTCAGAC
CGGGGAGCCT CTTTGGATCA GGAGTTTGGA AGGGGGAAGA GAAATTCTCA ACTATGAGGA GTACACAAGG ACAATGACAC
CTTGCATTGG TTTGAGACCC AATGGTTTTG TCACCGAGGC CTCTAGACAA ACTGGCATGG TCATCATAAA CAGCTTGGCT
CTTGTTGAAA CATTAATGGA CTCAAATCGA TGGTCAGAGA TGTTCCCTTG TATGATTGCT AGAACCTCAA CCGCTGAAGT
TATATCTAAT GGAATAAATG GAACTAGGAA TGGTGCCCTT CAGCTTATGC ATGCTGAACT TCAAGTCCTT TCGCCCTTGG
TTCCTGTTCG TGAGGTCAAT TTTCTACGCT TTTGCAAGCA GCACGCAGAG GGCTTGTGGG CAGTGGTGGA TGTGTCCATA
GACACCATCC GAGAAACTTC TGGTGCACCC ACTTTTGTGA ACTGTAGGAG GCTTCCTTCT GGTTGCGTAG TGCAAGATAT
GCCAAATGGT TACTCTAAGG TGACATGGGT GGAACATGCA GAATACGACG AAAGCCAAGT TCACCAGCTG TACCGACCCT
TGTTGAGCTC AGGCACGGGG TTTGGTGCAC AACGTTGGGT TGCCACCCTT CAACGCCAAT GCGAGTGCTT AGCCATTCTA
ATGTCCTCAG CAGTTCCCTC TAGAGAACAT TCAGCAATAA GCTCAGGTGG AAGGAGGAGC ATGCTGAAGC TAGCACAACG
CATGACGAAC AATTTCTGTG CTGGAGTTTG TGCCTCCACG GTGCACAAGT GGAACAAGCT GAACGCGGGG AACGTGGGGG
AGGACGTGAG GGTGATGACA AGGAAGAGCG TGGACGACCC CGGCGAGCCG CCGGGTATTG TTCTCAGCGC AGCCACCTCA
GTGTGGCTGC CGGTGTCGCC CCAAAGACTT TTCGACTTCC TGCGCGACGA GCGGCTCCGG AGTGAGTGGG ACATCCTCTC
GAACGGTGGA CCCATGCAAG AGATGGCTCA CATTGCCAAG GGACAAGACC ATGCTAACTG TGTCTCCCTC CTCAGAGCCA
GTGCTATGAA TGCGAACCAG AGCAGCATGT TGATTTTGCA GGAGACGTGC ACCGACGCGT CGGGGTCGCT TGTGGTGTAC
GCGCCGGTGG ACATTCCCGC AATGCACGTG GTGATGAACG GCGGCGACTC TGCCTACGTG GCGCTTCTCC CGTCGGGGTT
CGCCATCGTC CCGGATGGAT CCGCGGCTGG CGGAGAGCAA CACGGGGGCG CGTCGCAAAA GAGGACGGGT GGATGTCTTC
TGACGGTGGC GTTCCAGATT CTCGTGAACA GCCTCCCGAC GGCGAAGCTG ACGGTGGAGT CGGTGGAGAC CGTGAACAAC
CTCATCTCGT GCACAGTGCA GAAGATAAAA GCAGCGCTTC ACAGCGAGAG TTGA

>Vigan.04G100200.01
MSFGGFLEVK QSGGGGRIVS DIPYSNGSNH SNDIMPSGAI SQPRLASPTL AKSMFNSPGL SLALQSDVDG QGDMNRLMPE
NFEQNGLRRS REEEHESRSG SDNMDGASGD DFDAADNPPR KKRYHRHTPQ QIQELEALFK ECPHPDEKQR LELSRRLNLE
TRQVKFWFQN RRTQMKTQLE RHENSLLRQE NDKLRAENMS MREAMRNPMC SNCGGPAMIG EISLEEQHLR IENARLKDEL
DRVCALAGKF LGRPISSLTS SIGPPLPNSS LELGVGSNGF GGLSTVPATL PDFGVGISSP LAMMSPSTRP TATSTVVTAG
LDRSVERSIV LELALAAMDE LVKMAQTGEP LWIRSLEGGR EILNYEEYTR TMTPCIGLRP NGFVTEASRQ TGMVIINSLA
LVETLMDSNR WSEMFPCMIA RTSTAEVISN GINGTRNGAL QLMHAELQVL SPLVPVREVN FLRFCKQHAE GLWAVVDVSI
DTIRETSGAP TFVNCRRLPS GCVVQDMPNG YSKVTWVEHA EYDESQVHQL YRPLLSSGTG FGAQRWVATL QRQCECLAIL
MSSAVPSREH SAISSGGRRS MLKLAQRMTN NFCAGVCAST VHKWNKLNAG NVGEDVRVMT RKSVDDPGEP PGIVLSAATS
VWLPVSPQRL FDFLRDERLR SEWDILSNGG PMQEMAHIAK GQDHANCVSL LRASAMNANQ SSMLILQETC TDASGSLVVY
APVDIPAMHV VMNGGDSAYV ALLPSGFAIV PDGSAAGGEQ HGGASQKRTG GCLLTVAFQI LVNSLPTAKL TVESVETVNN
LISCTVQKIK AALHSES*