GBrowse Details

Vigan.04G104600.01

Basic Information:
Name: Vigan.04G104600.01
Multiple alignment
Variant Information
Position: Chr04:11123616..11129821 (+ strand)
Length: 6206
Functional Information:
Description: Similar to Uncharacterized protein. [I1N3G0, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Ankyrin repeat (IPR002110)
Zinc finger, C2H2 (IPR007087)
Ankyrin repeat-containing domain (IPR020683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:33.15,6.72,4.11,8.54,4.44,3.29,4.76,4.20
Arabidopsis thaliana homolog: AT1G01930.1
Structure :
Position: Chr04:11123616..11123655 (+ strand)
Length: 40
Type: five_prime_UTR
Position: Chr04:11123656..11123976 (+ strand)
Length: 321
Type: CDS
Position: Chr04:11124475..11124890 (+ strand)
Length: 416
Type: CDS
Position: Chr04:11126244..11126358 (+ strand)
Length: 115
Type: CDS
Position: Chr04:11127235..11127909 (+ strand)
Length: 675
Type: CDS
Position: Chr04:11128035..11128112 (+ strand)
Length: 78
Type: CDS
Position: Chr04:11128713..11128826 (+ strand)
Length: 114
Type: CDS
Position: Chr04:11129018..11129281 (+ strand)
Length: 264
Type: CDS
Position: Chr04:11129282..11129821 (+ strand)
Length: 540
Type: three_prime_UTR


>Vigan.04G104600.01
TATTTTTTGA GTTTCATCTG GGAGGCTATC GCTTACAACA ATGGCTACTC ATCTTGCTAC AGCAAAGGCC ACCGGGACGA
CGTCGTCTCA GGATAAACGA CACCGTTCCA TCTTCGATGT TCCGTCGAAT TTCTTCGACT CTTCTCGCCT TCTTCCTTCT
CCACACTCTT CCGTTTCCAA TCACCACACC GTAGACCAAA CCCAAACCCT TGAACCCTCC TCAAACGACG TCGTTATTTT
TGATGATTCT CAAAACGCTG TAGTTTCCGC GCCTAGGTTG ACCTGCAATA CCTGCAGAAC TCAATTTGAT TCCCTCCAAG
ATCAGCGTGG CCATTTCAAA TCCGACATTC ATCGGTTCAA CGTGAAGCTG ACAATTGCGG GAAAGAATAT TGTGAAGGAA
GAAGATTTTG AGGTGCTGAC ATCTGAATTT GTCAAAGACT ATGATATGTC AAGTATATCG GGATCAGAAA GTGATGATTC
ACAAAGTGAA ATTGTACTGC ATGACAAATC GAGTGAAAAT TTTAAACAGA AACTCTTCTT CCTTCTTCAG ACAGGGCTGA
GAGTTTCTGT CTGGAAGTGC TTGATCATGA ATGTGACTGA AAATGTATTG TATGATGATG AAAAGGCGGA GAATGACGTT
GTTCAGAAGT TGAAATCGCT GACTGCTGAG CCCAGAAACA ATACCCAGTT GAGGATTGTT CTGCTTGCAT CTGGTGGGCA
CTTTGCAGGT TGTGTCTTTG ATGGTGATGT TGTTGTGGCT CACAAGACAT TTCATAGATA TGTTGTGCGG GCCAAGGCAG
GAAAAAAACA GTCATCTAAA GATGCTTCTG GCAGGTCTAT ACATTCTGCC GGGGCCTCAC TTCGTCGTTA TAATGAACTT
GCATTAAAGA AGGAAGTGCA TGAACTGTTT ACAGCTTGGA AACCCTATTT TGATGTCTCC AATTGCGTAT TTATTCATGC
TCCTTCAAGT AGTCGTCAAC TGCTTTATGA TGGAGAAAGA CCATATTTTG GTAATCAGCA CTGTACTGTT AGAAACATTG
CTTTGAGTGT TCGGAGGCCC ACGTTCAGGG AGGTAAAGCG TGTATATAGT CATTTGACTC AGGTAACCTA CGAAGGTGAT
GAGAAGGAAG TTTTACAGAG CAAACAAGAG GATTTGGTAT CAGTTCCCAT TTCTAAAATA AATGGCAGTC CAATCTCCAA
CCAAGGGAAT GGGGCTGCGT TGCATGACAA AGATAAAGCT GAAGCTTGTT CAAGTAAGAA AAATGATGAA CTTTCCATTT
CGAGTAATGG AGAAAGTGAG AATGAGCTAT CTGGTAAATC AACTCCTTTA CATCAGGCAG CCCAATCTGG TGACTCTGTA
AAGGTTTTGG AACTCCTGGA ACAGGGCTTG GATCCTTGCT CCACAGATGA AAGGGGACGG ACCCCATATA TGTTGGCACA
TGACAAAGAA GTGAGGAATA ATTTCAGAAG GTTTATGGCA TCAAATCTTG ACAAATGGGA TTGGCATGCT GCCAAAGTAC
CCAGTGCATT GACCAAAGAA ATGGAAGAGT CACAAGCTGC TAAGCAGGCA GAAAAAGATG CTAAGAGAAA AGCAAGAGCA
AAGGAATTAA AGAAATTGCG TAAAGCAAAA GAAAAGAAGG CTCAGGTTGA AGCCACCTTG CCAAAGAATG ATTCCAAAAC
TGTGGAGAAG CAAGTAACAG CTTCATCATC GATAAAGGGA CAATCTCAAC TAAAAAGTGG CGTGCAATTA TCCAAAGAGG
ACCAAATAAG AATGGCACAG GCTGCCGAAA GAGAAAAGCG AGCAGCTGCT GCTGAGAGGA GAATAGCTGC CCTCAATATT
CAAGCTAACA GTACAACCGC TGCACCAAGC ATGTCAGGGC CTAAAAGTGG ATTAGCCGGT GACATTTACT GTTCCTGTTG
TAATTCATCA CTTGCTGGCA AAGTTCCCTT CCACCGGTAT AATTACAAAT ACTGCAGCAC ATCATGCATG CATGTACACA
AGGACATCCT AGACGATCAA TGACAATGTG TTTAGATATT TAAAATTTTC TTTTTGCAAG TCAAGATTGC TCCAAATATC
CATTTTCTTG ACTCGGTTGC AAGTTATCTT TGATGGAAAA GGCAAAAAGA AGTGAAGAGT GGTGGGGAGC AGCCGTGGTG
GAAGGATTCA ATGGTAAATA ACATGAGCTG ATTATTTCAA AGGAATACAA AATTGTTTTC TAAGCAACAT TGATACAGCT
AGAGTCATAA CAGCCATCTT AGAGCGTTCC CAATCTGTGT TGTGTCAAGC ATGAACACAG CAAATGACCA AGTGACAATT
TGGCATTGGT CCTGTATTAT GCATTTTCTT TTTCCGTATG TGGTTTTTTG TTCGAAGTAT AGTCTCTTGA CTTTATTTTA
TCAGGCATGA ATTGCCTGTT TCTAAATTAA CCAGATCTGA AAGGTAGATT AGTTAAGGAC TAGAGCTGTA TAACATACTC
TCTCCATTGG TGGATAGTAA AAAAGATTAT TTGGTATAGC CTCCTCACAA TTGTGAAGTG ACGTGAATGG TGTTGTTTTG
TCC

>Vigan.04G104600.01
ATGGCTACTC ATCTTGCTAC AGCAAAGGCC ACCGGGACGA CGTCGTCTCA GGATAAACGA CACCGTTCCA TCTTCGATGT
TCCGTCGAAT TTCTTCGACT CTTCTCGCCT TCTTCCTTCT CCACACTCTT CCGTTTCCAA TCACCACACC GTAGACCAAA
CCCAAACCCT TGAACCCTCC TCAAACGACG TCGTTATTTT TGATGATTCT CAAAACGCTG TAGTTTCCGC GCCTAGGTTG
ACCTGCAATA CCTGCAGAAC TCAATTTGAT TCCCTCCAAG ATCAGCGTGG CCATTTCAAA TCCGACATTC ATCGGTTCAA
CGTGAAGCTG ACAATTGCGG GAAAGAATAT TGTGAAGGAA GAAGATTTTG AGGTGCTGAC ATCTGAATTT GTCAAAGACT
ATGATATGTC AAGTATATCG GGATCAGAAA GTGATGATTC ACAAAGTGAA ATTGTACTGC ATGACAAATC GAGTGAAAAT
TTTAAACAGA AACTCTTCTT CCTTCTTCAG ACAGGGCTGA GAGTTTCTGT CTGGAAGTGC TTGATCATGA ATGTGACTGA
AAATGTATTG TATGATGATG AAAAGGCGGA GAATGACGTT GTTCAGAAGT TGAAATCGCT GACTGCTGAG CCCAGAAACA
ATACCCAGTT GAGGATTGTT CTGCTTGCAT CTGGTGGGCA CTTTGCAGGT TGTGTCTTTG ATGGTGATGT TGTTGTGGCT
CACAAGACAT TTCATAGATA TGTTGTGCGG GCCAAGGCAG GAAAAAAACA GTCATCTAAA GATGCTTCTG GCAGGTCTAT
ACATTCTGCC GGGGCCTCAC TTCGTCGTTA TAATGAACTT GCATTAAAGA AGGAAGTGCA TGAACTGTTT ACAGCTTGGA
AACCCTATTT TGATGTCTCC AATTGCGTAT TTATTCATGC TCCTTCAAGT AGTCGTCAAC TGCTTTATGA TGGAGAAAGA
CCATATTTTG GTAATCAGCA CTGTACTGTT AGAAACATTG CTTTGAGTGT TCGGAGGCCC ACGTTCAGGG AGGTAAAGCG
TGTATATAGT CATTTGACTC AGGTAACCTA CGAAGGTGAT GAGAAGGAAG TTTTACAGAG CAAACAAGAG GATTTGGTAT
CAGTTCCCAT TTCTAAAATA AATGGCAGTC CAATCTCCAA CCAAGGGAAT GGGGCTGCGT TGCATGACAA AGATAAAGCT
GAAGCTTGTT CAAGTAAGAA AAATGATGAA CTTTCCATTT CGAGTAATGG AGAAAGTGAG AATGAGCTAT CTGGTAAATC
AACTCCTTTA CATCAGGCAG CCCAATCTGG TGACTCTGTA AAGGTTTTGG AACTCCTGGA ACAGGGCTTG GATCCTTGCT
CCACAGATGA AAGGGGACGG ACCCCATATA TGTTGGCACA TGACAAAGAA GTGAGGAATA ATTTCAGAAG GTTTATGGCA
TCAAATCTTG ACAAATGGGA TTGGCATGCT GCCAAAGTAC CCAGTGCATT GACCAAAGAA ATGGAAGAGT CACAAGCTGC
TAAGCAGGCA GAAAAAGATG CTAAGAGAAA AGCAAGAGCA AAGGAATTAA AGAAATTGCG TAAAGCAAAA GAAAAGAAGG
CTCAGGTTGA AGCCACCTTG CCAAAGAATG ATTCCAAAAC TGTGGAGAAG CAAGTAACAG CTTCATCATC GATAAAGGGA
CAATCTCAAC TAAAAAGTGG CGTGCAATTA TCCAAAGAGG ACCAAATAAG AATGGCACAG GCTGCCGAAA GAGAAAAGCG
AGCAGCTGCT GCTGAGAGGA GAATAGCTGC CCTCAATATT CAAGCTAACA GTACAACCGC TGCACCAAGC ATGTCAGGGC
CTAAAAGTGG ATTAGCCGGT GACATTTACT GTTCCTGTTG TAATTCATCA CTTGCTGGCA AAGTTCCCTT CCACCGGTAT
AATTACAAAT ACTGCAGCAC ATCATGCATG CATGTACACA AGGACATCCT AGACGATCAA TGA

>Vigan.04G104600.01
MATHLATAKA TGTTSSQDKR HRSIFDVPSN FFDSSRLLPS PHSSVSNHHT VDQTQTLEPS SNDVVIFDDS QNAVVSAPRL
TCNTCRTQFD SLQDQRGHFK SDIHRFNVKL TIAGKNIVKE EDFEVLTSEF VKDYDMSSIS GSESDDSQSE IVLHDKSSEN
FKQKLFFLLQ TGLRVSVWKC LIMNVTENVL YDDEKAENDV VQKLKSLTAE PRNNTQLRIV LLASGGHFAG CVFDGDVVVA
HKTFHRYVVR AKAGKKQSSK DASGRSIHSA GASLRRYNEL ALKKEVHELF TAWKPYFDVS NCVFIHAPSS SRQLLYDGER
PYFGNQHCTV RNIALSVRRP TFREVKRVYS HLTQVTYEGD EKEVLQSKQE DLVSVPISKI NGSPISNQGN GAALHDKDKA
EACSSKKNDE LSISSNGESE NELSGKSTPL HQAAQSGDSV KVLELLEQGL DPCSTDERGR TPYMLAHDKE VRNNFRRFMA
SNLDKWDWHA AKVPSALTKE MEESQAAKQA EKDAKRKARA KELKKLRKAK EKKAQVEATL PKNDSKTVEK QVTASSSIKG
QSQLKSGVQL SKEDQIRMAQ AAEREKRAAA AERRIAALNI QANSTTAAPS MSGPKSGLAG DIYCSCCNSS LAGKVPFHRY
NYKYCSTSCM HVHKDILDDQ *