GBrowse Details

Vigan.04G105000.01

Basic Information:
Name: Vigan.04G105000.01
Multiple alignment
Variant Information
Position: Chr04:11301967..11303552 (+ strand)
Length: 1586
Functional Information:
Description: Similar to leucine-rich repeat-containing protein DDB_G0290503-like. [XP_004492646.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.23,9.58,16.15,9.16,0.56,2.17,5.00,20.78
Automatic updates:
Name: NM_001248669 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein LITTLE ZIPPER 2-like (ZPR1B), mRNA.
PubMed ID: 30769886 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:11301967..11302628 (+ strand)
Length: 662
Type: five_prime_UTR
Position: Chr04:11302629..11302741 (+ strand)
Length: 113
Type: CDS
Position: Chr04:11302870..11303095 (+ strand)
Length: 226
Type: CDS
Position: Chr04:11303096..11303552 (+ strand)
Length: 457
Type: three_prime_UTR


>Vigan.04G105000.01
GTTATCGATT TTGAATGTGA TGTCACACTT ATCTTCTTCT ATTCTACTAT CATAATTAGT ACAAGTAATT TGATCACAAG
GCAGATGACT TTTATGAGTA GTTTTTGTGG TTTGAAGATC CCATGGAAAG AGTGAGAGGA CCTAAACTGA AAGGGAAACT
TCTAAACTAT TCCAAAAAGT GTAACTCAAC TTACTGAATA ATGGGTACGG TGCTTTTTCT ATGTGCCCCC CCTATCCTTC
TCAATTTCTC AATGTTACCC ACCATCCCAA GTTAGACTCT GAACCAAAGC AATCAAAAAG GCATAGAAAG AAGAGTGTCA
TTTTTCTTCA TCCTCTTCTG CTTTCCCTCA TCTATTGCTG CCCTTTGTAA TCATGAGTCC TTGTGCCATC ATTGCTATAT
AAAAGTCTCT CTCTTTCTCT CTCTCTCTCT CATTATCTCT CATACAAACA CAAGATCACA GCTATATTAT AACACTTTTT
CTTTCACCCT AGTAGTTTCC TACCAAGTTC TTCTCACCTA TAAAAACCCC TTGTAGCCTA TTTGTTACAC CTCACAATCC
ATTTTTTGTT TATTTGTTAT TCTGTTTTGT AAGTGAACTT TTATTCTCAA GCTTATAGCT CTTCTTCTCT GAAAGGCCTT
GGCTTTTTAG AAGGGAAACA GCATGTGCTC TTTCTCTTCA AAACAGACCC TTTGTGGCCC TCTCCTTTTG GCACTTCCTC
GTCCATGGCC ATCTAAGAGA CACCACAGGC ACCTTCGGTT GGGCCTGCTC CAAAGAAGGA GGGCACACTT GAAAGAAGCG
AGACAGAGGA AAAGGATGGT TGTGGTGAAA GCTGAAATTC AGATGAAAAA CTTGAAATTG TACATGGAGA ATCAAACAAT
CATAGAGGAG AATGAGAAGT TGAGGAAGCA AGCCATGCTT CTGCACAAAG AGAATCAGGC CTTATTGACA CAGCTCCAAA
AGAAGCTTTC AGAACAGACC AACAATACCA ACAATAACTA GCTATTAGCT GATTTATATA TACAGTTTAT TAGTGTGGTG
AGAGTAGGAG AAATCGAAGG GTCCGTGTCA ATGATCCTTT TCTGATGTTA GCCCTGTATC TTGTTGACTT TGCATCTTCT
TCTTTTTTGT TTTTTGTTTT TTGTTTGCAT CTTAGTCGGA GCCTTGGAGG TTAAATTAAT TAATTTTCTA GCAATAAGTT
TAGAGTGGTG TAATAAAGAT AAATAGGTAA TATGCCAATT GTAAGCATTA CATGGAATAT AGAATTGCGC AACGTTGTGT
TAGTTTTTTT AAATTTCTCA CTTGTTAGTT TTCCTGATGT CATGTTTAGA GTAGGGGACA CTGACACTGA ATACTTAACA
GTGTCTTAGC TTTTTCCTGT CATAAGTCTT TGATTAAGCT GATCAATTCG TTTATAAATA TACCTTTCAA TAATAAAATC
ACAACATTTT TCAACTGG

>Vigan.04G105000.01
ATGTGCTCTT TCTCTTCAAA ACAGACCCTT TGTGGCCCTC TCCTTTTGGC ACTTCCTCGT CCATGGCCAT CTAAGAGACA
CCACAGGCAC CTTCGGTTGG GCCTGCTCCA AAGAAGGAGG GCACACTTGA AAGAAGCGAG ACAGAGGAAA AGGATGGTTG
TGGTGAAAGC TGAAATTCAG ATGAAAAACT TGAAATTGTA CATGGAGAAT CAAACAATCA TAGAGGAGAA TGAGAAGTTG
AGGAAGCAAG CCATGCTTCT GCACAAAGAG AATCAGGCCT TATTGACACA GCTCCAAAAG AAGCTTTCAG AACAGACCAA
CAATACCAAC AATAACTAG

>Vigan.04G105000.01
MCSFSSKQTL CGPLLLALPR PWPSKRHHRH LRLGLLQRRR AHLKEARQRK RMVVVKAEIQ MKNLKLYMEN QTIIEENEKL
RKQAMLLHKE NQALLTQLQK KLSEQTNNTN NN*