VIGGS:GBrowse

Vigan.04G105100.01

Basic Information:

Name:	Vigan.04G105100.01 Multiple alignment Variant Information
Position:	Chr04:11304248..11307814 (- strand)
Length:	3567

Functional Information:

Description:	Similar to Uncharacterized protein. [I1L6T8, Glycine max]
GO:	Biological Process: metabolic process (GO:0008152)
	Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: 4-hydroxy-tetrahydrodipicolinate synthase (GO:0008840)
	Molecular Function: lyase activity (GO:0016829)
InterPro:	DapA-like (IPR002220)
	Dihydrodipicolinate synthase (4-hydroxy-tetrahydrodipicolinate synthase), DapA (IPR005263)
	Aldolase-type TIM barrel (IPR013785)
	Dihydrodipicolinate synthetase, conserved site (IPR020624)
	Dihydrodipicolinate synthetase, active site (IPR020625)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:26.75,39.47,26.21,23.95,28.80,110.54,33.17,23.93
Arabidopsis thaliana homolog:	AT2G45440.1, AT3G60880.2

Structure :

[show][hide]Parts:

Position:	Chr04:11304248..11304478 (- strand)
Length:	231
Type:	three_prime_UTR

Position:	Chr04:11304479..11305403 (- strand)
Length:	925
Type:	CDS

Position:	Chr04:11305884..11305964 (- strand)
Length:	81
Type:	CDS

Position:	Chr04:11307529..11307611 (- strand)
Length:	83
Type:	CDS

Position:	Chr04:11307612..11307814 (- strand)
Length:	203
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G105100.01
GTTTAAGAAG TGTGGAAGAG TAGACAGGTG CAGTGGTGTG TGTCATTTTC CGTTTCGCAC ATAGAAAAAA GCCAAAGTAC
TCTTCGCCGC CATTTTCTAC TCTCACTGAA GTCATCTTCT TCCCATTCCT CTTCTAAGAT CTCCCTTCCA ACGACACCGT
TTTGATCTTC CCATTCGGAT CTTCTTCTCC AGTTTCTCAA ATCATGGCTA CACTCAAAAC CCTTTGCTTC AGAGCTGCCA
CCTTCCCCGA TTGCCCCTCC AATGTCACCA ATAATAAAAA CACCAGGAGC TCAAACTGGA AGCCTCCACA AGCAGCTGTG
AAACCTAGTT TGCACCTCCC AATGCGCAGC TTTGAGTTGA AGAATAGGAC TTCCCCAGAG GACATAAAGT GTCTGAGGTT
GATAACTGCC ATCAAAACTC CATACCTACC TGATGGGCGA TTTGATCTTG AAGCGTACGA TGACTTGGTG AATATGCAGA
TTGGAGAAGG GGTCGAAGGT GTTATTGTTG GTGGGACAAC TGGTGAAGGA CAATTAATGA GCTGGGAGGA GCACATAATG
CTCATTGCTC ATACAGTTAA CTGTTTTGGT GGGAAAGTTA AGGTTATTGG AAATACTGGA AGCAACTCCA CCAGGGAAGC
AATTCATGCC ACTGAGCAGG GTTTTGCTGT TGGAATGCAT GCTGCCCTTC ACATAAACCC CTACTACGGA AAAACCTCGT
TGGATGGCAT GGTTGCTCAC TTTCAAAGTG TGCTTCCGAT GGGACCCACT ATAATCTATA ATGTGCCTTC ACGGACTGGT
CAAGACATTC CTCCACATGT AATTCAAACC TTAGCTGAAA GTTCTAACTT AGCTGGTGTC AAGGAGTGTG TTGGAAATGA
TCGGATCAAG CAGTATACAG ACAATGACAT TGTTGTGTGG AGTGGAAATG ATGATCAATG CCATGATGCT AGATGGGATT
ATGGGGCTAC TGGAGTGATA TCTGTTACAA GCAACCTGGT TCCTGGTCTA ATGCGGGAAC TGATGTATGG TTTAAATCCT
AGGCTAAATT CTAAGCTCTT ACCTCTGATT GACTGGCTTT TCCACATGCC AAACCCCATT GGGTTGAACA CTGCTCTTGC
TCAACTTGGG GTTGTCAGGC CCGTTTTTAG GCTACCATTT GTACCTCTCC CTTTTGAGAA AAGGATAGAA TTTGCCAATA
TAGTGAAGGC AATTGGCCGA GAGCATTTTG TTGGAAATAA AGATGTTGAG GTTCTTGATG ACGAAGACTT TTTCTTGGTC
AGTCGTTATT AAATTATCTT GTAGGTTTAT TGTATCCTCC TTTCTGGGGG GTTTTCCAAA CATCAAATCA TGATGAGTCT
GCTGTAGTGA ATTGAAGTGA TTACCTAGTT TCTTTTTACT GGCTACTCTG TAGTTGGGAA CTGTTTCAAA TCTGTGTAGT
TTGAATTTAT GTGCTACTGC ATATTCTATT TATCGTGTTT TGAGCAGTGA AACATAACAA CGATGAATCA ATCCCTAATT
TTC

[show][hide][copy]CDS

>Vigan.04G105100.01
ATGGCTACAC TCAAAACCCT TTGCTTCAGA GCTGCCACCT TCCCCGATTG CCCCTCCAAT GTCACCAATA ATAAAAACAC
CAGGAGCTCA AACTGGAAGC CTCCACAAGC AGCTGTGAAA CCTAGTTTGC ACCTCCCAAT GCGCAGCTTT GAGTTGAAGA
ATAGGACTTC CCCAGAGGAC ATAAAGTGTC TGAGGTTGAT AACTGCCATC AAAACTCCAT ACCTACCTGA TGGGCGATTT
GATCTTGAAG CGTACGATGA CTTGGTGAAT ATGCAGATTG GAGAAGGGGT CGAAGGTGTT ATTGTTGGTG GGACAACTGG
TGAAGGACAA TTAATGAGCT GGGAGGAGCA CATAATGCTC ATTGCTCATA CAGTTAACTG TTTTGGTGGG AAAGTTAAGG
TTATTGGAAA TACTGGAAGC AACTCCACCA GGGAAGCAAT TCATGCCACT GAGCAGGGTT TTGCTGTTGG AATGCATGCT
GCCCTTCACA TAAACCCCTA CTACGGAAAA ACCTCGTTGG ATGGCATGGT TGCTCACTTT CAAAGTGTGC TTCCGATGGG
ACCCACTATA ATCTATAATG TGCCTTCACG GACTGGTCAA GACATTCCTC CACATGTAAT TCAAACCTTA GCTGAAAGTT
CTAACTTAGC TGGTGTCAAG GAGTGTGTTG GAAATGATCG GATCAAGCAG TATACAGACA ATGACATTGT TGTGTGGAGT
GGAAATGATG ATCAATGCCA TGATGCTAGA TGGGATTATG GGGCTACTGG AGTGATATCT GTTACAAGCA ACCTGGTTCC
TGGTCTAATG CGGGAACTGA TGTATGGTTT AAATCCTAGG CTAAATTCTA AGCTCTTACC TCTGATTGAC TGGCTTTTCC
ACATGCCAAA CCCCATTGGG TTGAACACTG CTCTTGCTCA ACTTGGGGTT GTCAGGCCCG TTTTTAGGCT ACCATTTGTA
CCTCTCCCTT TTGAGAAAAG GATAGAATTT GCCAATATAG TGAAGGCAAT TGGCCGAGAG CATTTTGTTG GAAATAAAGA
TGTTGAGGTT CTTGATGACG AAGACTTTTT CTTGGTCAGT CGTTATTAA

[show][hide][copy]PROTEIN

>Vigan.04G105100.01
MATLKTLCFR AATFPDCPSN VTNNKNTRSS NWKPPQAAVK PSLHLPMRSF ELKNRTSPED IKCLRLITAI KTPYLPDGRF
DLEAYDDLVN MQIGEGVEGV IVGGTTGEGQ LMSWEEHIML IAHTVNCFGG KVKVIGNTGS NSTREAIHAT EQGFAVGMHA
ALHINPYYGK TSLDGMVAHF QSVLPMGPTI IYNVPSRTGQ DIPPHVIQTL AESSNLAGVK ECVGNDRIKQ YTDNDIVVWS
GNDDQCHDAR WDYGATGVIS VTSNLVPGLM RELMYGLNPR LNSKLLPLID WLFHMPNPIG LNTALAQLGV VRPVFRLPFV
PLPFEKRIEF ANIVKAIGRE HFVGNKDVEV LDDEDFFLVS RY*