GBrowse Details

Vigan.04G112900.01

Basic Information:
Name: Vigan.04G112900.01
Multiple alignment
Variant Information
Position: Chr04:12646550..12649317 (+ strand)
Length: 2768
Functional Information:
Description: Similar to Thioredoxin. [V7B2J3, Phaseolus vulgaris]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.27,3.22,6.74,4.38,2.37,6.73,9.21,5.81
Arabidopsis thaliana homolog: AT3G08710.1
Automatic updates:
Name: NM_001422411 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula thioredoxin H9 (LOC25498857), mRNA.
PubMed ID: 31837401 NCBI(pubmed)
21239621 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:12646550..12647420 (+ strand)
Length: 871
Type: five_prime_UTR
Position: Chr04:12647421..12647444 (+ strand)
Length: 24
Type: CDS
Position: Chr04:12648045..12648167 (+ strand)
Length: 123
Type: CDS
Position: Chr04:12648592..12648714 (+ strand)
Length: 123
Type: CDS
Position: Chr04:12648813..12648965 (+ strand)
Length: 153
Type: CDS
Position: Chr04:12648966..12649317 (+ strand)
Length: 352
Type: three_prime_UTR


>Vigan.04G112900.01
TGGTGTAATT GTGACTTTTC ATTCAATTAT ATTTCCTTTT CTGCTTTTAT TTTTTATGGG GTTGTTTTTG ATGTATGGAA
AATTATGGAA AGCTTGCAAC TTTAACTTTC CAGGTATAGA AATTTTGGTT TTGACGTGAT TCCTGAATTT CTGCTTTCTG
TTCTTTTGGG TTTTAACAAA AGCAGTTTTC CGAGAAAGAG TCTAAATGTT GGAACCAGAG AGTTTGTTTA CTTTGCTCTG
CACTTCTGGG AGGTCTTGTT ATGGCATTGT TGCTGGGAAT GGATGAAATG AAATTGTTTG AGAAATAAAC CATGTGCAAT
GTCTAATTAT GCAGTGTAAA TGTCTTTTGA TGTCCCTTTA TATTCTGCTC GTTTTCCAAT TGGTTTCTAC TAAGCAAACA
CTACTCTTCT TGTGATCGTG GAGGAGTGGA GGTTTTCTTG CTCTCTGCTT CAACTTGACG AGTGTTGGGA ATGGAATAAT
AATGTTTGAA GAGTAAAATA GTTTCCTTGC CCTGTTTATT TTTGCCTCTT CTGGTTTATC TCTTATCAGA TTTCATCTTT
TCTTGTCTTG TAGATGTGTG TGGGTTATGA AAATGTAAAA GTGATTTCTG ATATTTTGTT CAGTGAACAT TATGGAGTGC
ATATTTTCTT ATGCTGCTTA ATTTATGCTT TTACCTGTGT GGTCTGGGTG TAATTTGGAG GATGATGTAG TCTATTAATG
GGGTGTTGCA TACATTTATT AATCAACAAC CTCTGACTAG GCTATTGTTT TGGTGGACTA AGAGAAGTTT TATCTGCTGG
CATTGGTTGT CTTTTTCCTT TCAGGCATCC ATCCATTAAA GTTCACAAGT TTGAGGTTCT CAAACAGTTA AATGGGGAAT
TGTGTGGCTA ATAAGTCTCA AGCTAAGGAT AGTGATTCTG ATCATGATGT GGAGTTTGCT GCTGGCAATG TGAAACTTAT
TACCACCAAA GAAGCTTGGG ACCAATATTT GGAAGAAGCT AGGAGGGATG GCAAAATTGT GATTGCGAAT TTCAGTGCAA
CATGGTGTGG TCCTTGTAAG GTGATTGCGC CATATTACTG CGAGTTATCT GAGAAATACA CATCCATGAT GTTCTTGCTA
GTAGATGTGG ATGAACTAAC TGAGTTCAGC ACTTCATGGG ACATCAAAGC CACACCAACT TTCTTCTTTC TTAAAGATGG
ACAACAAGTT GACAAACTTG TAGGAGCCAA CAAGCCAGAG CTGCAGAAGA AGATTGTTGC CATCAATGAT TCACTTCCCG
AATGCAAGCA GTGACTGTTT TCTCATTCTT CTTCTTGTGC CCTTTGTCCT TTCACAAGTC ACAACCATTG TTCGCATGTT
TTGATTTTGC TGTGAGTGTA GTTGTATTTT TCCTCGGATG TAAATATGAA ACATGTGTGT CACATGAATT ACTTCAATTC
AAAGTGATGA TGTTGTTGTA GTTAGAATAA GGCTGTTCTG CAAATGTAAC AATTTGTTGT GTTTTGTTGT TTGAGAAAAT
TCAATTTTGT ATCATGCCAT ATGCCTCCAT TTCTCATTGG TTATGATATC ACTGCACTAC AAACTATTTG CAAAATCTAA
ATGCATAGAT AGAGAGAGAT TGTTCACCTA CTTAGTGTCT AGCAAT

>Vigan.04G112900.01
ATGGGGAATT GTGTGGCTAA TAAGTCTCAA GCTAAGGATA GTGATTCTGA TCATGATGTG GAGTTTGCTG CTGGCAATGT
GAAACTTATT ACCACCAAAG AAGCTTGGGA CCAATATTTG GAAGAAGCTA GGAGGGATGG CAAAATTGTG ATTGCGAATT
TCAGTGCAAC ATGGTGTGGT CCTTGTAAGG TGATTGCGCC ATATTACTGC GAGTTATCTG AGAAATACAC ATCCATGATG
TTCTTGCTAG TAGATGTGGA TGAACTAACT GAGTTCAGCA CTTCATGGGA CATCAAAGCC ACACCAACTT TCTTCTTTCT
TAAAGATGGA CAACAAGTTG ACAAACTTGT AGGAGCCAAC AAGCCAGAGC TGCAGAAGAA GATTGTTGCC ATCAATGATT
CACTTCCCGA ATGCAAGCAG TGA

>Vigan.04G112900.01
MGNCVANKSQ AKDSDSDHDV EFAAGNVKLI TTKEAWDQYL EEARRDGKIV IANFSATWCG PCKVIAPYYC ELSEKYTSMM
FLLVDVDELT EFSTSWDIKA TPTFFFLKDG QQVDKLVGAN KPELQKKIVA INDSLPECKQ *