VIGGS:GBrowse

Vigan.04G113600.01

Basic Information:

Name:	Vigan.04G113600.01 Multiple alignment Variant Information
Position:	Chr04:12733691..12734668 (+ strand)
Length:	978

Functional Information:

Description:	Similar to uncharacterized protein. [A2Z2P3, Oryza sativa subsp. indica]
InterPro:	Protein of unknown function DUF599 (IPR006747)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.13,0.00,2.98,0.08,1.79,0.38,16.77,4.47
Arabidopsis thaliana homolog:	AT5G43180.1

Automatic updates:

Name:	NM_001250641 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527542 (LOC100527542), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:12733691..12733760 (+ strand)
Length:	70
Type:	five_prime_UTR

Position:	Chr04:12733761..12733925 (+ strand)
Length:	165
Type:	CDS

Position:	Chr04:12734007..12734519 (+ strand)
Length:	513
Type:	CDS

Position:	Chr04:12734520..12734668 (+ strand)
Length:	149
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G113600.01
AAAACACGCA TCTCATGTCT CGTTCATTCT TACCAAACTT TTTCATTTCT TCATCAAAAC AGGGAAAAAG ATGAGAGTGG
CTATTTGTTT GGACACCATT TTCATCCCTT TGAGTCTCCT CATCACACTG AGTTACCATG TCTATCTTTG CCACACCATC
AAGAACAATC CTTCGCGTAC AACTTACGGA ATCGACAAGC TCAAAAGAAC AACTTGGAGC CTTAACTTAA ATCAGGGTGA
TGCGAGCAAA GCTATGTTGA CAGTGCAAAG CTTGAGGAAC ACTCTTATGT CTACAATACT GACAGCTACT ATAACCATTC
TGATAAACTT GGGTTTGGCA GCTTTGAGCA ACAACGGCTA CAATGCTAGC CATCTCTTTA GCAGTGGATT TTTCGGTTCT
AAGTCAGATA AAACGTTCGT TTTGAAGTAT GGATCAACAT CAATTTGTTT GGTGATGAGC TTCATGTTCA GTTCGATGGC
GATAGGGTTT CTGATCGATG CGAATTTTCT GATGAATGCG TACGGGGAGT TTTTGTCAGG AGGGTACACA CACACCATAT
TAGAAAGAGG GTTCACCTTA GCTCTTGTGG GAAGTAGGGT GCTCTGTGTT GCTGTTCCTT TGATGCTATG GATGCTGGGT
CCAGTTCCAG TACTCATGGC TTCCTTGGTC TTGGTTTTTG TCCTTCATGA GTTGGACTTT GTCTGCAAAT TTCCTCACAA
ACATACCCAA TCTATCATTG CAAAATAGCC CTCCTAAAAC AATCTCTTTT ATCATAATAT CAAATTTGTT TTTTATTTAT
ATATTATAAT TTATTTTTAT GTTATATTTA GTCACTTTCA TAAACAGATT TATATTAAAA TATCCAAACA GTGACCAGAC
TCATCTTTTA TTAGCCA

[show][hide][copy]CDS

>Vigan.04G113600.01
ATGAGAGTGG CTATTTGTTT GGACACCATT TTCATCCCTT TGAGTCTCCT CATCACACTG AGTTACCATG TCTATCTTTG
CCACACCATC AAGAACAATC CTTCGCGTAC AACTTACGGA ATCGACAAGC TCAAAAGAAC AACTTGGAGC CTTAACTTAA
ATCAGGGTGA TGCGAGCAAA GCTATGTTGA CAGTGCAAAG CTTGAGGAAC ACTCTTATGT CTACAATACT GACAGCTACT
ATAACCATTC TGATAAACTT GGGTTTGGCA GCTTTGAGCA ACAACGGCTA CAATGCTAGC CATCTCTTTA GCAGTGGATT
TTTCGGTTCT AAGTCAGATA AAACGTTCGT TTTGAAGTAT GGATCAACAT CAATTTGTTT GGTGATGAGC TTCATGTTCA
GTTCGATGGC GATAGGGTTT CTGATCGATG CGAATTTTCT GATGAATGCG TACGGGGAGT TTTTGTCAGG AGGGTACACA
CACACCATAT TAGAAAGAGG GTTCACCTTA GCTCTTGTGG GAAGTAGGGT GCTCTGTGTT GCTGTTCCTT TGATGCTATG
GATGCTGGGT CCAGTTCCAG TACTCATGGC TTCCTTGGTC TTGGTTTTTG TCCTTCATGA GTTGGACTTT GTCTGCAAAT
TTCCTCACAA ACATACCCAA TCTATCATTG CAAAATAG

[show][hide][copy]PROTEIN

>Vigan.04G113600.01
MRVAICLDTI FIPLSLLITL SYHVYLCHTI KNNPSRTTYG IDKLKRTTWS LNLNQGDASK AMLTVQSLRN TLMSTILTAT
ITILINLGLA ALSNNGYNAS HLFSSGFFGS KSDKTFVLKY GSTSICLVMS FMFSSMAIGF LIDANFLMNA YGEFLSGGYT
HTILERGFTL ALVGSRVLCV AVPLMLWMLG PVPVLMASLV LVFVLHELDF VCKFPHKHTQ SIIAK*