GBrowse Details

Vigan.04G115100.01

Basic Information:
Name: Vigan.04G115100.01
Multiple alignment
Variant Information
Position: Chr04:12891650..12895324 (- strand)
Length: 3675
Functional Information:
Description: Similar to elongation factor P-like. [XP_004492556.1, Cicer arietinum]
GO: Biological Process: translational elongation (GO:0006414)
Biological Process: peptide biosynthetic process (GO:0043043)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: translation elongation factor activity (GO:0003746)
InterPro: Translation elongation factor P/YeiP, central (IPR001059)
Translation protein SH3-like domain (IPR008991)
Translation elongation factor P (IPR011768)
Nucleic acid-binding, OB-fold (IPR012340)
Translation elongation factor, KOW-like (IPR013185)
Translation elongation factor P/YeiP, conserved site (IPR013852)
Ribosomal protein L2 domain 2 (IPR014722)
Elongation factor P, C-terminal (IPR015365)
Translation elongation factor P/YeiP (IPR020599)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,2.72,9.62,16.35,5.72,7.55,3.17,4.79
Arabidopsis thaliana homolog: AT3G08740.1
Automatic updates:
Name: NM_001249862 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max elongation factor P (LOC100306051), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250004 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500109 (LOC100500109), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:12891650..12891883 (- strand)
Length: 234
Type: three_prime_UTR
Position: Chr04:12891884..12892002 (- strand)
Length: 119
Type: CDS
Position: Chr04:12892451..12892532 (- strand)
Length: 82
Type: CDS
Position: Chr04:12893246..12893347 (- strand)
Length: 102
Type: CDS
Position: Chr04:12893606..12893683 (- strand)
Length: 78
Type: CDS
Position: Chr04:12894725..12894831 (- strand)
Length: 107
Type: CDS
Position: Chr04:12894918..12894995 (- strand)
Length: 78
Type: CDS
Position: Chr04:12895071..12895218 (- strand)
Length: 148
Type: CDS
Position: Chr04:12895219..12895324 (- strand)
Length: 106
Type: five_prime_UTR


>Vigan.04G115100.01
CGTAAATTGA GCCAAAGTGG TGTTCAGGTG GCGAAACAGA AGAAAGTCTC TTATCTTCTT TGTAAGAACA ACACCAAGAA
AGAAGCATTT ACAGTTTGGA GCAACAATGG TGGCGGGAAT CGCAAACTTG AAGCTTAACC TTTCGGCATT TTCCTCTTCA
ATGTCGAGTT TCACAGCTTC CTCCTCCTCC TCCTCTTCGT TCCCCTCTCT TCTTCCAATG CGAACCCCTT CTTCTTCTAA
ACCCCGATTT TTCAGAATTT ACGCCTTGAC CAGCAACGAC ATCAAGGTGG GCACCAACCT CGAAGTCGAT GGTGCTCCTT
GGCGCGTGAT AGAATTTCTC CATGTTAAGC CTGGAAAAGG TGCGGCGTTT GTGAGGACCA AGTTGAAGAA TTATATCACG
GGGAACACGG TGGAGAAAAC ATTTAGAGCT GGAAGCTCGA TTGACCTAGC AGATGTATAC AAGGAAACAA AGCAGTTCAC
GTATAAAGAT GGTGCTCAAT TTGTCTTCAT GGACTTGAGT ACATACGAGG AGTTTCGTCT GGGTGAAAAG GAAATCGGAG
ACAGAACAAA GTGGCTAAAA GAAGGAATGG ACTGCAATTT GCTGTTATGG AATGGAAAAG TTATTGATGT TGATCTCCCT
ATCACAGTTA AGCTTACTGT AGTTGACGTG GACCCAGGAC TTAAGGGTGA CACAGCCCAA GGTGGAACAA AACCGGCCAC
ACTCGACACT GGCGCTGTTG TCAATGTCCC ACTTTTTGTA AATGTCGGTG ATGAAATATT AGTTGATTCA AGAACTGGAC
AGTACATGAG CCGTGCTTAA GATTTCGCAT CAAATTTTGT AATCCAAATC CCGAGAATTC TTGTTCATTT TGTTCTTTTA
ACTTTTTAGG AAATAATTTA CCAATGAAGA TGGATTACGT TCATTAACAT TAGCAAACTG GCAGTCTTCT ATAACATTGA
GTTAAAATTG TGTTGTAATA TATTTGCGAT ACTCAAGTTC TTACAGTGAT TCGGCTATAA TTATGGTACA TAACGTTCTT
ACAGAAAAAA CCCA

>Vigan.04G115100.01
ATGGTGGCGG GAATCGCAAA CTTGAAGCTT AACCTTTCGG CATTTTCCTC TTCAATGTCG AGTTTCACAG CTTCCTCCTC
CTCCTCCTCT TCGTTCCCCT CTCTTCTTCC AATGCGAACC CCTTCTTCTT CTAAACCCCG ATTTTTCAGA ATTTACGCCT
TGACCAGCAA CGACATCAAG GTGGGCACCA ACCTCGAAGT CGATGGTGCT CCTTGGCGCG TGATAGAATT TCTCCATGTT
AAGCCTGGAA AAGGTGCGGC GTTTGTGAGG ACCAAGTTGA AGAATTATAT CACGGGGAAC ACGGTGGAGA AAACATTTAG
AGCTGGAAGC TCGATTGACC TAGCAGATGT ATACAAGGAA ACAAAGCAGT TCACGTATAA AGATGGTGCT CAATTTGTCT
TCATGGACTT GAGTACATAC GAGGAGTTTC GTCTGGGTGA AAAGGAAATC GGAGACAGAA CAAAGTGGCT AAAAGAAGGA
ATGGACTGCA ATTTGCTGTT ATGGAATGGA AAAGTTATTG ATGTTGATCT CCCTATCACA GTTAAGCTTA CTGTAGTTGA
CGTGGACCCA GGACTTAAGG GTGACACAGC CCAAGGTGGA ACAAAACCGG CCACACTCGA CACTGGCGCT GTTGTCAATG
TCCCACTTTT TGTAAATGTC GGTGATGAAA TATTAGTTGA TTCAAGAACT GGACAGTACA TGAGCCGTGC TTAA

>Vigan.04G115100.01
MVAGIANLKL NLSAFSSSMS SFTASSSSSS SFPSLLPMRT PSSSKPRFFR IYALTSNDIK VGTNLEVDGA PWRVIEFLHV
KPGKGAAFVR TKLKNYITGN TVEKTFRAGS SIDLADVYKE TKQFTYKDGA QFVFMDLSTY EEFRLGEKEI GDRTKWLKEG
MDCNLLLWNG KVIDVDLPIT VKLTVVDVDP GLKGDTAQGG TKPATLDTGA VVNVPLFVNV GDEILVDSRT GQYMSRA*