GBrowse Details

Vigan.04G124500.01

Basic Information:
Name: Vigan.04G124500.01
Multiple alignment
Variant Information
Position: Chr04:14629095..14630658 (- strand)
Length: 1564
Functional Information:
Description: Similar to Uncharacterized protein. [K7LGJ5, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.12,2.63,2.24,2.81,0.55,13.97,0.76,1.00
Arabidopsis thaliana homolog: AT3G51680.1
Automatic updates:
Name: BT097268 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16C21 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:14629095..14629307 (- strand)
Length: 213
Type: three_prime_UTR
Position: Chr04:14629308..14630127 (- strand)
Length: 820
Type: CDS
Position: Chr04:14630515..14630594 (- strand)
Length: 80
Type: CDS
Position: Chr04:14630595..14630658 (- strand)
Length: 64
Type: five_prime_UTR

>Vigan.04G124500.01 class=Sequence position=Chr04:14629095..14630658 (- strand)
AAAACCCTCT GCTACCTCTG TTTTTCTCTG ACCTTTGCTC TCTTTCCATT CTCAACTCTC AACCATGATT GTCATGTCTG
AGAAACCCCT TCAACCAGTT ACTCCACAGG TTTCAGAAAC CACCCTTTGT CCTTCTTCTA AGAGGTATTC AACTTTGTGC
TTCAATGGTT TCTCTCTATA GCTTTACACT TTCCAAATCA TTTTTTTTGG TAAATGAAAA GTCTCTTCCA CCCATCATTC
GCTAGTTTGC AATCTTCAAT CCTCTTCAGC TCGTTGAACT TCTAAGGAGA AACTATACAT TATCTTTAGC ACGGTCTAAT
GCTTTTGTAA CATTGAATTA ATGTTATTTT TGTTATTCAA ATCTATTTAA AGAAGTAATA TCTGTCAATA AAAGTTGTAT
GATCTGAGGT GTGGGTTGAA TTTCTGACAG TGCATTTCTT TAGTCATGCT AGATATTATC AACATAAAAA TCAAGAACCT
TGCAAGTTAT TGTTATTTTT TGCCTGTTAA ATGTTTGATA TTATACTTCA GGTTGGAAGG CAAAATTGCT ATTGTAACTG
GGGGTGCTAG GGGGATAGGT GAAGCAACTG TGAGAGTTTT TGTGAAGCAT GGTGCAAAGG TGGTGATTGC TGATGTTGAG
GATGCAGCTG GAGCCATGCT TGCAGAGACA CTGTCTCCAT CAGCCACCTA TGTCCACTGC GATGTTAGCT TGGAGAAAGA
GGTTGAGAAC TTGGTGAGTT TCACAGTTTC TCGCTATGGA CACCTTGACA TCATGTTCAA CAATGCTGGG GTGCTAGGGA
ACCAGTCCAA GAACAAGAGC ATTGTGAACT TTGATCCTGA TGAGTTTAAC AGAGTGATGT GTGTGAATGT GAAGGGAGTG
GCTCTGGGAA TGAAGCATGC TGCAAGGGTG ATGATTCCAA GAGGAGTAGG GTGCATAATC TCAACTTGCA GTGTTGCAGG
GGTCATGGGG GGCCTGGGAC CACATGCTTA CACAGCCTCA AAGCATGCCA TAGTTGGTCT TACAAAGAAC ACTTCTTGTG
AGTTGGGGAA GTATGGGATA AGAGTGAATT GCATTTCACC ATTTGGAGTG GCTACTTCCA TGCTGGTGAA TGCATGGAGG
TCTTGTGAAG AGGAAGAGGA CATCAATTTT GGGGTGCCCT TCCCAGAGGA GGTGGAGAAG ATGGAGGAGT TTGTTAGAAG
TCTTGCCAAC TTGAGAGGAA CAACTTTGAG GGCAGTGGAC ATAGCTGAGG CTGCACTTTA TCTTGCCAGT GATGAATCTA
AGTATGTCAG TGGCCACAAT CTTGTTGTGG ATGGTGGAGT CACTTCCTCA AGAAATTGTA TTGGATTGTA ACTTCAATTT
CTTCGTTTAT TCATGTTCCT TGTTTTTCTT CATAGTTGGT AGCTGCCGGT GTAGGATCAT GCAAATGTGT CAAGCTTGTA
CAATGATTCT CAATCAATAA TTCTTCAGTA TGCACACTTG CAGTTATTCT GAACACTGAT TAAGTCAAGG ATTTTTTCTC
AACTCGGTCT ACTATGGTTG AATATATGTT ATTTTGATTG TAAA

>Vigan.04G124500.01
AAAACCCTCT GCTACCTCTG TTTTTCTCTG ACCTTTGCTC TCTTTCCATT CTCAACTCTC AACCATGATT GTCATGTCTG
AGAAACCCCT TCAACCAGTT ACTCCACAGG TTTCAGAAAC CACCCTTTGT CCTTCTTCTA AGAGGTTGGA AGGCAAAATT
GCTATTGTAA CTGGGGGTGC TAGGGGGATA GGTGAAGCAA CTGTGAGAGT TTTTGTGAAG CATGGTGCAA AGGTGGTGAT
TGCTGATGTT GAGGATGCAG CTGGAGCCAT GCTTGCAGAG ACACTGTCTC CATCAGCCAC CTATGTCCAC TGCGATGTTA
GCTTGGAGAA AGAGGTTGAG AACTTGGTGA GTTTCACAGT TTCTCGCTAT GGACACCTTG ACATCATGTT CAACAATGCT
GGGGTGCTAG GGAACCAGTC CAAGAACAAG AGCATTGTGA ACTTTGATCC TGATGAGTTT AACAGAGTGA TGTGTGTGAA
TGTGAAGGGA GTGGCTCTGG GAATGAAGCA TGCTGCAAGG GTGATGATTC CAAGAGGAGT AGGGTGCATA ATCTCAACTT
GCAGTGTTGC AGGGGTCATG GGGGGCCTGG GACCACATGC TTACACAGCC TCAAAGCATG CCATAGTTGG TCTTACAAAG
AACACTTCTT GTGAGTTGGG GAAGTATGGG ATAAGAGTGA ATTGCATTTC ACCATTTGGA GTGGCTACTT CCATGCTGGT
GAATGCATGG AGGTCTTGTG AAGAGGAAGA GGACATCAAT TTTGGGGTGC CCTTCCCAGA GGAGGTGGAG AAGATGGAGG
AGTTTGTTAG AAGTCTTGCC AACTTGAGAG GAACAACTTT GAGGGCAGTG GACATAGCTG AGGCTGCACT TTATCTTGCC
AGTGATGAAT CTAAGTATGT CAGTGGCCAC AATCTTGTTG TGGATGGTGG AGTCACTTCC TCAAGAAATT GTATTGGATT
GTAACTTCAA TTTCTTCGTT TATTCATGTT CCTTGTTTTT CTTCATAGTT GGTAGCTGCC GGTGTAGGAT CATGCAAATG
TGTCAAGCTT GTACAATGAT TCTCAATCAA TAATTCTTCA GTATGCACAC TTGCAGTTAT TCTGAACACT GATTAAGTCA
AGGATTTTTT CTCAACTCGG TCTACTATGG TTGAATATAT GTTATTTTGA TTGTAAA

>Vigan.04G124500.01
ATGATTGTCA TGTCTGAGAA ACCCCTTCAA CCAGTTACTC CACAGGTTTC AGAAACCACC CTTTGTCCTT CTTCTAAGAG
GTTGGAAGGC AAAATTGCTA TTGTAACTGG GGGTGCTAGG GGGATAGGTG AAGCAACTGT GAGAGTTTTT GTGAAGCATG
GTGCAAAGGT GGTGATTGCT GATGTTGAGG ATGCAGCTGG AGCCATGCTT GCAGAGACAC TGTCTCCATC AGCCACCTAT
GTCCACTGCG ATGTTAGCTT GGAGAAAGAG GTTGAGAACT TGGTGAGTTT CACAGTTTCT CGCTATGGAC ACCTTGACAT
CATGTTCAAC AATGCTGGGG TGCTAGGGAA CCAGTCCAAG AACAAGAGCA TTGTGAACTT TGATCCTGAT GAGTTTAACA
GAGTGATGTG TGTGAATGTG AAGGGAGTGG CTCTGGGAAT GAAGCATGCT GCAAGGGTGA TGATTCCAAG AGGAGTAGGG
TGCATAATCT CAACTTGCAG TGTTGCAGGG GTCATGGGGG GCCTGGGACC ACATGCTTAC ACAGCCTCAA AGCATGCCAT
AGTTGGTCTT ACAAAGAACA CTTCTTGTGA GTTGGGGAAG TATGGGATAA GAGTGAATTG CATTTCACCA TTTGGAGTGG
CTACTTCCAT GCTGGTGAAT GCATGGAGGT CTTGTGAAGA GGAAGAGGAC ATCAATTTTG GGGTGCCCTT CCCAGAGGAG
GTGGAGAAGA TGGAGGAGTT TGTTAGAAGT CTTGCCAACT TGAGAGGAAC AACTTTGAGG GCAGTGGACA TAGCTGAGGC
TGCACTTTAT CTTGCCAGTG ATGAATCTAA GTATGTCAGT GGCCACAATC TTGTTGTGGA TGGTGGAGTC ACTTCCTCAA
GAAATTGTAT TGGATTGTAA 

>Vigan.04G124500.01
MIVMSEKPLQ PVTPQVSETT LCPSSKRLEG KIAIVTGGAR GIGEATVRVF VKHGAKVVIA DVEDAAGAML AETLSPSATY
VHCDVSLEKE VENLVSFTVS RYGHLDIMFN NAGVLGNQSK NKSIVNFDPD EFNRVMCVNV KGVALGMKHA ARVMIPRGVG
CIISTCSVAG VMGGLGPHAY TASKHAIVGL TKNTSCELGK YGIRVNCISP FGVATSMLVN AWRSCEEEED INFGVPFPEE
VEKMEEFVRS LANLRGTTLR AVDIAEAALY LASDESKYVS GHNLVVDGGV TSSRNCIGL*