GBrowse Details

Vigan.04G129600.01

Basic Information:
Name: Vigan.04G129600.01
Multiple alignment
Variant Information
Position: Chr04:15402705..15406597 (+ strand)
Length: 3893
Functional Information:
Description: Similar to Cp protein. [Q70VA9, Celosia cristata.]
InterPro: Protein of unknown function DUF538 (IPR007493)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:65.75,39.38,18.23,35.18,21.57,21.22,51.33,13.52
Arabidopsis thaliana homolog: AT5G37070.1
Automatic updates:
Name: NM_001248432 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305947 (LOC100305947), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:15402705..15402840 (+ strand)
Length: 136
Type: five_prime_UTR
Position: Chr04:15402841..15402927 (+ strand)
Length: 87
Type: CDS
Position: Chr04:15405076..15405130 (+ strand)
Length: 55
Type: CDS
Position: Chr04:15405855..15406225 (+ strand)
Length: 371
Type: CDS
Position: Chr04:15406226..15406597 (+ strand)
Length: 372
Type: three_prime_UTR


>Vigan.04G129600.01
TCCAAAAGCA ACAATAAAGT GAAAAGAACG TAGCAGAGGT TTGGTCAGAG ATTAGACTTC TCAGAATTTA TGTTGTGAAG
TTGTTTATTC TGAGAAGGAA GAGAGAAAAG AGAAGAGAAA AGAGAAGAAC TCAACTATGG ATGAGATATT GAACAAGGTG
GGGTCATACT GGTTCAGCCG CAAGGCCAGC AAGGAGTTTA ACTCTGTTGG AGATGATATC AACTCACTGT CAACCAGTAT
TGAAGGGGGA ACCAAATGGT TGGTCAACAA ATTAAAAGGA AAGATGCAAA AGCCATTAAC GGAGTTACTA AAGGAGTATG
ATCTACCCAT TGGAATGTTT CCTCGTGATG CAACAAACTA CGAATTCAAT GAAGAAACTG GGAAACTTGT TGTTTACATT
CCTCAAGTGT GCGAAGTCGG CTACCGAGAT TCATCAGTGT TGCGGTTCTC CACTATTGTG AGTGGTTATT TGGAGAAAGG
AAAGCTAGCA GAAATAGAGG GAATAAAGAC TAAGGTGCTG ATCTGGGTAA AAGTAACCAC CATTTCATCT GAGGGACCAA
AGCTCCACTT CATGGCCGGC ATGAAGAAGA CAAGGAAAAG GGAAGCATAT GAGGTTACTA GAGATGGTAT AAATGTAGAT
AAGTTCTAAT ATATTTACAA CAAGTTACTC TTGTTCAGTA GTTTTACGGT TACTAAAATA AGTTATCTGT TCTTGTGGAT
CATTTTATTC TATTAGATAT GAATGTAGTG AGTGAATTGG AATTTGGAAT TTAGTGGAAC CTCTTTGTTC CTGCTGGATG
TGAAGTGGTT TCAGTTTTTA CTTTTTGGGT TCATATGTGC TAGTGAACAC CAATGTGGGT GTTTGGATAA CCATTTAAGT
AAGAAAAATG ATATTTAAAA AGAAATTCTT TGTAGTTTGT ACCGTACCAT TTAATATGAA AGTACTTTTA GAAGGGTTTG
TAATGGTAAT CCAAACATGA CTGGAGGATA TTGTCAAAAA AATTAAATTG GTAGATGACT C

>Vigan.04G129600.01
ATGGATGAGA TATTGAACAA GGTGGGGTCA TACTGGTTCA GCCGCAAGGC CAGCAAGGAG TTTAACTCTG TTGGAGATGA
TATCAACTCA CTGTCAACCA GTATTGAAGG GGGAACCAAA TGGTTGGTCA ACAAATTAAA AGGAAAGATG CAAAAGCCAT
TAACGGAGTT ACTAAAGGAG TATGATCTAC CCATTGGAAT GTTTCCTCGT GATGCAACAA ACTACGAATT CAATGAAGAA
ACTGGGAAAC TTGTTGTTTA CATTCCTCAA GTGTGCGAAG TCGGCTACCG AGATTCATCA GTGTTGCGGT TCTCCACTAT
TGTGAGTGGT TATTTGGAGA AAGGAAAGCT AGCAGAAATA GAGGGAATAA AGACTAAGGT GCTGATCTGG GTAAAAGTAA
CCACCATTTC ATCTGAGGGA CCAAAGCTCC ACTTCATGGC CGGCATGAAG AAGACAAGGA AAAGGGAAGC ATATGAGGTT
ACTAGAGATG GTATAAATGT AGATAAGTTC TAA

>Vigan.04G129600.01
MDEILNKVGS YWFSRKASKE FNSVGDDINS LSTSIEGGTK WLVNKLKGKM QKPLTELLKE YDLPIGMFPR DATNYEFNEE
TGKLVVYIPQ VCEVGYRDSS VLRFSTIVSG YLEKGKLAEI EGIKTKVLIW VKVTTISSEG PKLHFMAGMK KTRKREAYEV
TRDGINVDKF *