VIGGS:GBrowse

Vigan.04G129800.01

Basic Information:

Name:	Vigan.04G129800.01 Multiple alignment Variant Information
Position:	Chr04:15452149..15454926 (+ strand)
Length:	2778

Functional Information:

Description:	Similar to Ferritin. [Q66N72, Phaseolus angularis]
GO:	Biological Process: iron ion transport (GO:0006826)
	Biological Process: cellular iron ion homeostasis (GO:0006879)
	Molecular Function: ferric iron binding (GO:0008199)
InterPro:	Ferritin (IPR001519)
	Ferritin/DPS protein domain (IPR008331)
	Ferritin- like diiron domain (IPR009040)
	Ferritin-like superfamily (IPR009078)
	Ferritin-related (IPR012347)
	Ferritin, conserved site (IPR014034)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:258.98,20.05,108.57,43.92,130.56,564.28,50.62,24.12

Automatic updates:

Name:	KX832295 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max cultivar Co(Soy) 3 ferritin mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249605 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ferritin (LOC547698), mRNA.
PubMed ID:	18037378 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001251572 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ferritin light chain (H-1), mRNA; nuclear gene for chloroplast product.
PubMed ID:	22204240 NCBI(pubmed)
	20702403 NCBI(pubmed)
	10096297 NCBI(pubmed)
	1896472 NCBI(pubmed)
	2264818 NCBI(pubmed)
	2211706 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001329818 NCBI(nuccore)
Organism:	Vigna angularis
Description:	Vigna angularis ferritin, chloroplastic (LOC108329281), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:15452149..15452347 (+ strand)
Length:	199
Type:	five_prime_UTR

Position:	Chr04:15452348..15452640 (+ strand)
Length:	293
Type:	CDS

Position:	Chr04:15453424..15453507 (+ strand)
Length:	84
Type:	CDS

Position:	Chr04:15453606..15453666 (+ strand)
Length:	61
Type:	CDS

Position:	Chr04:15453773..15453860 (+ strand)
Length:	88
Type:	CDS

Position:	Chr04:15453981..15454042 (+ strand)
Length:	62
Type:	CDS

Position:	Chr04:15454130..15454195 (+ strand)
Length:	66
Type:	CDS

Position:	Chr04:15454496..15454559 (+ strand)
Length:	64
Type:	CDS

Position:	Chr04:15454686..15454735 (+ strand)
Length:	50
Type:	CDS

Position:	Chr04:15454736..15454926 (+ strand)
Length:	191
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G129800.01
AAAATATAGA TCTCACTTTT CAAAACTCCC AAAATACCCC TCCCTCCACC TACATATACC TTCTTGTCCC ACGCAAGCTT
CACCACCACC ACAACTCAGA CCTCAATTCT TAGCCGCCAT TGTCTCTTCT ACTTCCTTCT CCATTTCCTT TCCCTGTTTC
TCAGCCTTTT TCGATTACCC TTTTGGAGAT TTTGATCTCA TGGCCCTCGC TCCTTCTAAA GTTTCTCCCT TTTCTGGGTT
CTCCCTCTCA GACTGTGTTG GGGGTGCCGC GAGAAACCCA ACTTGTTCTG TTTCTTTGAG TTTTCTGAAT AAGAAAGGGG
AAAGCAGAAA CCTTGGGGTT TCTGCCTCAA CTGCGCCTCT CACTGGGGTG ATCTTTGAAC CCTTTGAGGA GGTTAAGAAG
GAAGAGCTCG CTGTTCCCAC TGCTCCACAG GTTTCGTTGG CTCGTCAGTA TTACGCTGAT GATTGCGAAT CTGCGATTAA
CGAGCAGATT AATGTGGAAT ACAATGCTTC CTATGTGTAC CACTCCTTGT TTGCATACTT TGACAGGGAC AACGTAGCTC
TCAAGGGATT TGCCAAGTTC TTCAAGGAAT CTAGTGAAGA AGAAAGAGAG CATGCTGAAA AGCTTATGAA ATATCAGAAC
ACTCGTGGTG GAAGAGTTGT TCTTCACTCC ATCAAGAATG TACCCTCAGA ATTTGAGCAT GTGGAAAAGG GGGATGCATT
ACATGCAATG GAATTAGCTT TGTCTTTGGA GAAGTTGGTG AATGAGAAAC TTCGGAGTGT GCACAGTGTG GCAGATCGCA
ACAATGACCC TCAATTGGCT GACTTCATAG AAAGCGAGTT TCTGTCTGAA CAGGTTGAAG CAATTAAGAA GATATCAGAG
TATGTGGCTC AACTGAGGAG GGTCGGAAAG GGTCACGGTG TGTGGCACTT TGATCAAAGT CTTCTTCATG ATGGACATGC
TGCTTGAATA GTCTTTATAG TTCTCGTTTC CATTTGTTCT TCCATTGCCT TCTGAGCTGT TTTCTAATTT AGAAGTAGAA
TTTAAATGTT TTTCCTCTGT ATTGAGGTGT AAGAACTTGT AGTGTTGTCG CAGCAAGTAT GTAAAAGACT ACATGTTATG
CAATATCATT TGATATTTCT TTCTCTTTTC AACTGCAA

[show][hide][copy]CDS

>Vigan.04G129800.01
ATGGCCCTCG CTCCTTCTAA AGTTTCTCCC TTTTCTGGGT TCTCCCTCTC AGACTGTGTT GGGGGTGCCG CGAGAAACCC
AACTTGTTCT GTTTCTTTGA GTTTTCTGAA TAAGAAAGGG GAAAGCAGAA ACCTTGGGGT TTCTGCCTCA ACTGCGCCTC
TCACTGGGGT GATCTTTGAA CCCTTTGAGG AGGTTAAGAA GGAAGAGCTC GCTGTTCCCA CTGCTCCACA GGTTTCGTTG
GCTCGTCAGT ATTACGCTGA TGATTGCGAA TCTGCGATTA ACGAGCAGAT TAATGTGGAA TACAATGCTT CCTATGTGTA
CCACTCCTTG TTTGCATACT TTGACAGGGA CAACGTAGCT CTCAAGGGAT TTGCCAAGTT CTTCAAGGAA TCTAGTGAAG
AAGAAAGAGA GCATGCTGAA AAGCTTATGA AATATCAGAA CACTCGTGGT GGAAGAGTTG TTCTTCACTC CATCAAGAAT
GTACCCTCAG AATTTGAGCA TGTGGAAAAG GGGGATGCAT TACATGCAAT GGAATTAGCT TTGTCTTTGG AGAAGTTGGT
GAATGAGAAA CTTCGGAGTG TGCACAGTGT GGCAGATCGC AACAATGACC CTCAATTGGC TGACTTCATA GAAAGCGAGT
TTCTGTCTGA ACAGGTTGAA GCAATTAAGA AGATATCAGA GTATGTGGCT CAACTGAGGA GGGTCGGAAA GGGTCACGGT
GTGTGGCACT TTGATCAAAG TCTTCTTCAT GATGGACATG CTGCTTGA

[show][hide][copy]PROTEIN

>Vigan.04G129800.01
MALAPSKVSP FSGFSLSDCV GGAARNPTCS VSLSFLNKKG ESRNLGVSAS TAPLTGVIFE PFEEVKKEEL AVPTAPQVSL
ARQYYADDCE SAINEQINVE YNASYVYHSL FAYFDRDNVA LKGFAKFFKE SSEEEREHAE KLMKYQNTRG GRVVLHSIKN
VPSEFEHVEK GDALHAMELA LSLEKLVNEK LRSVHSVADR NNDPQLADFI ESEFLSEQVE AIKKISEYVA QLRRVGKGHG
VWHFDQSLLH DGHAA*