GBrowse Details

Vigan.04G132200.01

Basic Information:
Name: Vigan.04G132200.01
Multiple alignment
Variant Information
Position: Chr04:15769089..15772912 (+ strand)
Length: 3824
Functional Information:
Description: Similar to Uncharacterized protein. [I1N306, Glycine max]
GO: Biological Process: ammonium transport (GO:0015696)
Biological Process: ammonium transmembrane transport (GO:0072488)
Cellular Component: membrane (GO:0016020)
Molecular Function: ammonium transmembrane transporter activity (GO:0008519)
InterPro: Ammonium transporter (IPR001905)
Blood group Rhesus C/E/D polypeptide (IPR002229)
Ammonium transporter, conserved site (IPR018047)
Ammonium transporter AmtB-like domain (IPR024041)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.50,0.03,6.21,9.70,7.09,1.87,12.16,4.09
Arabidopsis thaliana homolog: AT2G38290.1
Automatic updates:
Name: NM_001361527 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ammonium transporter AMT2.1 (AMT2.1), mRNA.
PubMed ID: 20627949 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:15769089..15769489 (+ strand)
Length: 401
Type: five_prime_UTR
Position: Chr04:15769490..15770131 (+ strand)
Length: 642
Type: CDS
Position: Chr04:15770531..15770816 (+ strand)
Length: 286
Type: CDS
Position: Chr04:15771186..15771289 (+ strand)
Length: 104
Type: CDS
Position: Chr04:15772228..15772656 (+ strand)
Length: 429
Type: CDS
Position: Chr04:15772657..15772912 (+ strand)
Length: 256
Type: three_prime_UTR


>Vigan.04G132200.01
ATCGAAACTT TGACTTTTCC TTCTAAATCC AGCGAATTGC TGCAGCCACT TATGAAAAGC CAACACCAAT TTACACAAAC
CTTTATAGAG ATTCAATCAA ACCGAGTATC CCACTTTTCA AATTACTTTC ATGAACCTAT ATACGCAAAT TTCCATCCCC
AAAAAACAAA GTGATTTCTT TCAAATACTG TGCCACTTCA TAGTATGCAC GCAATTTTTT GTCTGATCTT TCATGTGAAA
CGGTAAAGTA CTAAATCGGA GTACTTAGCA GAGATTTAGG TGTCTTTTTG GAGAGACAAT TTTTGGACAT GCCCTTGATT
TCACACATAT ATATATTGGA TCAAAGAGAT AGCAATTGTG AAGGGTGAAA GGACTTGTAA AGAATTGAAG CATCTTCAAC
CATGACTACT CCTTTGGCTT ACCAAGAACA CCTTCCTGCA GCACCCGGAT GGCTGAACAA AGGGGATAAC GCTTGGCAGT
TAACAGCAGC AACTCTTGTT GGTCTTCAAA GCATGCCAGG CCTTGTGATT CTCTATGCCA GCATAGTGAA GAAAAAGTGG
GCTGTGAACT CGGCTTTCAT GGCTCTCTAT GCCTTTGCAG CAGTTCTCAT TTGTTGGGTG CTTGTGTGTT ACCGAATGGC
CTTTGGAGAG GAACTTTTGC CCTTCTGGGG TAAGGGTGCC CCAGCACTAG GTCAAAATTT TCTCACAAAA CGAGCCATAG
TTATGGAAAC CACCCACCGC TTTGATAATG GGACTGTTGA GACCCCTGCT GAAGAACCCT TTTATCCCAT GGCTACGCTT
GTTTATTTCC AATTCACTTT TGCTGCTATT ACTCTCATCT TGTTGGCTGG CTCTGTCCTT GGCCGAATGA ACATCAAGGC
TTGGATGGCT TTTGTGCCTC TTTGGTTAAT CTTTTCTTAC ACTGTTGGGG CTTTCAGTCT CTGGGGTGGT GGCTTTCTCT
ACCAATGGGG TGTCATAGAT TACTCTGGTG GCTATGTCAT CCACCTTTCC TCTGGAATCT CCGGTTTAAC TGCTGCTTAT
TGGGTTGGAC CAAGGTTGAA GAGTGACAGA GAGAGGTTTC CACCAAACAA TGTGCTGCTG ATGCTTGCAG GTGCAGGGTT
GTTGTGGATG GGGTGGTCAG GGTTCAATGG TGGAGCGCCA TATGCTGCAA ACATTGCATC TTCAGTTGCT GTGCTGAACA
CAAACATTGC CGCAGCCACA AGTCTCCTTG TATGGACAAC TTTGGATGTC ATTGTCTTCG GGAAACCTTC TGTGATTGGA
GCTGTGCAGG GCATGATGAC TGGTCTTGCA TGCATCACAC CAGGAGCAGG GCTTGTGCAA TCGTGGGCTG CTATAGTGAT
GGGAATTGCA TCTGGTAGCA TTCCATGGGT CACCATGATG ATTTTGCATA AAAAGTCAAC ATTGTTGCAA CAGGTAGATG
ACACCCTTGG TGTGTTTCAC ACGCATGCCG TGGCTGGGTT TTTGGGTGGT CTCCTCACAG GTCTATTTGC AGAACCAGCT
TTGTGTAGGT TACTATTGCC GGTTACGAAC TCAAGGGGTG CGTTCTATGG AGGAGAAGGT GGCATGCAAT TCGTGAAGCA
ATTGGTGGCA GCGATGTTTG TGATTGCATG GAACTTGGTG TCCACCACCA TCATTCTCCT TTTCATACAG CTTTTCATAC
CGTTGAGGAT GCCGGACGAG CAGCTGGAGA CCGGCGACGA CGCCGTCCAC GGCGAGGAAG CGTATGCCCT GTGGGGTGAC
GGAGAAAGAT ATGACCCAAC CAGACATGGT TCATTGCAGA CTTCCAACAC TGCTGTCTCA CCTTATGTCA ATGGTGCAAG
AGGGTTCACT ATAGACCTGT AGCTTTCCTC ATATGTATAA AGTTAATCTA CGTTTCATAA GATTAGTAGA TGATGAATCA
CTCAGTGCTG TAAGTAGAAA TTTGGTTCTG TCATTTTTGT GGTAAGAGAT CTTCAATGTA CTCTAACATT CAGTGTGTAA
ATTTTTTCTC CAGTTCCTCC GGCACACAAG TTAGAGTTAT TTATTGCTGA TAAATTACTT TTCCTTTTTT TGGGTGAAGA
AGGAAATTTT ACCAGTGATA TAATTTTTAG GTGAATTT

>Vigan.04G132200.01
ATGACTACTC CTTTGGCTTA CCAAGAACAC CTTCCTGCAG CACCCGGATG GCTGAACAAA GGGGATAACG CTTGGCAGTT
AACAGCAGCA ACTCTTGTTG GTCTTCAAAG CATGCCAGGC CTTGTGATTC TCTATGCCAG CATAGTGAAG AAAAAGTGGG
CTGTGAACTC GGCTTTCATG GCTCTCTATG CCTTTGCAGC AGTTCTCATT TGTTGGGTGC TTGTGTGTTA CCGAATGGCC
TTTGGAGAGG AACTTTTGCC CTTCTGGGGT AAGGGTGCCC CAGCACTAGG TCAAAATTTT CTCACAAAAC GAGCCATAGT
TATGGAAACC ACCCACCGCT TTGATAATGG GACTGTTGAG ACCCCTGCTG AAGAACCCTT TTATCCCATG GCTACGCTTG
TTTATTTCCA ATTCACTTTT GCTGCTATTA CTCTCATCTT GTTGGCTGGC TCTGTCCTTG GCCGAATGAA CATCAAGGCT
TGGATGGCTT TTGTGCCTCT TTGGTTAATC TTTTCTTACA CTGTTGGGGC TTTCAGTCTC TGGGGTGGTG GCTTTCTCTA
CCAATGGGGT GTCATAGATT ACTCTGGTGG CTATGTCATC CACCTTTCCT CTGGAATCTC CGGTTTAACT GCTGCTTATT
GGGTTGGACC AAGGTTGAAG AGTGACAGAG AGAGGTTTCC ACCAAACAAT GTGCTGCTGA TGCTTGCAGG TGCAGGGTTG
TTGTGGATGG GGTGGTCAGG GTTCAATGGT GGAGCGCCAT ATGCTGCAAA CATTGCATCT TCAGTTGCTG TGCTGAACAC
AAACATTGCC GCAGCCACAA GTCTCCTTGT ATGGACAACT TTGGATGTCA TTGTCTTCGG GAAACCTTCT GTGATTGGAG
CTGTGCAGGG CATGATGACT GGTCTTGCAT GCATCACACC AGGAGCAGGG CTTGTGCAAT CGTGGGCTGC TATAGTGATG
GGAATTGCAT CTGGTAGCAT TCCATGGGTC ACCATGATGA TTTTGCATAA AAAGTCAACA TTGTTGCAAC AGGTAGATGA
CACCCTTGGT GTGTTTCACA CGCATGCCGT GGCTGGGTTT TTGGGTGGTC TCCTCACAGG TCTATTTGCA GAACCAGCTT
TGTGTAGGTT ACTATTGCCG GTTACGAACT CAAGGGGTGC GTTCTATGGA GGAGAAGGTG GCATGCAATT CGTGAAGCAA
TTGGTGGCAG CGATGTTTGT GATTGCATGG AACTTGGTGT CCACCACCAT CATTCTCCTT TTCATACAGC TTTTCATACC
GTTGAGGATG CCGGACGAGC AGCTGGAGAC CGGCGACGAC GCCGTCCACG GCGAGGAAGC GTATGCCCTG TGGGGTGACG
GAGAAAGATA TGACCCAACC AGACATGGTT CATTGCAGAC TTCCAACACT GCTGTCTCAC CTTATGTCAA TGGTGCAAGA
GGGTTCACTA TAGACCTGTA G

>Vigan.04G132200.01
MTTPLAYQEH LPAAPGWLNK GDNAWQLTAA TLVGLQSMPG LVILYASIVK KKWAVNSAFM ALYAFAAVLI CWVLVCYRMA
FGEELLPFWG KGAPALGQNF LTKRAIVMET THRFDNGTVE TPAEEPFYPM ATLVYFQFTF AAITLILLAG SVLGRMNIKA
WMAFVPLWLI FSYTVGAFSL WGGGFLYQWG VIDYSGGYVI HLSSGISGLT AAYWVGPRLK SDRERFPPNN VLLMLAGAGL
LWMGWSGFNG GAPYAANIAS SVAVLNTNIA AATSLLVWTT LDVIVFGKPS VIGAVQGMMT GLACITPGAG LVQSWAAIVM
GIASGSIPWV TMMILHKKST LLQQVDDTLG VFHTHAVAGF LGGLLTGLFA EPALCRLLLP VTNSRGAFYG GEGGMQFVKQ
LVAAMFVIAW NLVSTTIILL FIQLFIPLRM PDEQLETGDD AVHGEEAYAL WGDGERYDPT RHGSLQTSNT AVSPYVNGAR
GFTIDL*