GBrowse Details

Vigan.04G137700.01

Basic Information:
Name: Vigan.04G137700.01
Multiple alignment
Variant Information
Position: Chr04:16911157..16913792 (+ strand)
Length: 2636
Functional Information:
Description: Similar to CPRD49 protein. [Q9AYM5, Vigna unguiculata]
GO: Biological Process: lipid metabolic process (GO:0006629)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
InterPro: Lipase, GDSL (IPR001087)
SGNH hydrolase-type esterase domain (IPR013831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.24,37.09,40.76,2.48,27.76,0.22,260.56
Automatic updates:
Name: NM_001255442 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GDSL esterase/lipase CPRD49-like (LOC100792188), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:16911157..16911332 (+ strand)
Length: 176
Type: five_prime_UTR
Position: Chr04:16911333..16911443 (+ strand)
Length: 111
Type: CDS
Position: Chr04:16911852..16911929 (+ strand)
Length: 78
Type: CDS
Position: Chr04:16912507..16912647 (+ strand)
Length: 141
Type: CDS
Position: Chr04:16912799..16912875 (+ strand)
Length: 77
Type: CDS
Position: Chr04:16913007..16913150 (+ strand)
Length: 144
Type: CDS
Position: Chr04:16913260..16913476 (+ strand)
Length: 217
Type: CDS
Position: Chr04:16913477..16913792 (+ strand)
Length: 316
Type: three_prime_UTR


>Vigan.04G137700.01
CGGGGACAAG TAGAGAGAGA GAGAGAAAAG GAACAAGAAT ATTCAGAATT ATTCCTGCTC TATAAATTCC TCATCCCAAT
GTCGTAGGAG GAGTGTGTAG TGTTTCTTGT TTGAGACTGA GGGTAGACAA AAAGGGAGAG AAACATAAAT TATTTAGTTT
CTCATTCTTT TCATTCATGG CAGGCCCATT GAGACCTCAG ATTGTGTTAT TTGGTTCTTC CATAATTCAA ATGAGCTTCG
ACAATGGTGG TTGGGGTGCC ATTCTAGCTA ACTTGTACGC CAGAAAGGCG GATATCGTCT TGCGTGGATA CTCAGGTTGG
AATTCAAGAA GGGCTTTGGA AGTTATGGAT GAAATTTTTC CTAAGGATGC TAGTGTACAA CCATCATTGG TGATTGTATA
CTTTGGTGGT AATGATTCTA TCGATCCTCA CCCATCTGGC CTTGGTCCTC ATGTGCCCCT CCAAGAATAT GTTGAAAACA
TGAGGAAGAT TGCTAATCAT TTAAAGAGTC TTTCGGATCA CATTCGTGTC ATATTTCTCA CCTCTCCTCC GATTAATGAA
GAACAGCTTC GCAGAAAGCT CAGTGCAACG CAATCAGGAA GGAGCAACGA GTCATGTGGA GTATATGCAA ACGCATTAAT
GGAGCTTTGT GAGGAAATGA ATTTGAAGGC TATTAATCTC TGGTCTGCAA TTCAGGCCAG GGAAGATTGG TTAGACGTTA
GCTTTACGGA TGGAGTTCAT CTGTCAGCTG AAGGAAGCAA GGTGGTGGTG AAGGAAATAT TAAGGATTCT CAGGGAAGCA
GATTGGAAAA CCAGTTTGCA TTGGATGTCA ATGCCAACAG AATATGCAGA AGATTCACCA TATTATCCTC CCACTCCTGA
TGGAACTAAA ACCATAAATG TTTCTCACAT TGTCTCCCGA AGGTGTTTGC AGTGGGATAT ATAACATATA CAACTATATA
TATATATATA TATATATATA TATATATATA TATGTTATGT GTTTATTTTT CATGGAAGAG GCTCATGATG TGTTGTGTAA
GTGGAGCCAT TGAAAGTGAT ATCTGCCTAC CCTGTACTTT GTGTGAGCGT TTTTACTATT CTATTGTAGT TTTCGTTCTG
TAAATGTGTT TTTATTGTAT TAATCAATTT AAAATTCCAC TCAATTTCCT TCTGGTTTGC AACTTCCAAT CTCGTGCACA
GTGTATTATT AGTCTCTCCC TTCTCGTTTT AATTTCTGAT CGGTCTCAAT TTTACTTTCA 

>Vigan.04G137700.01
ATGGCAGGCC CATTGAGACC TCAGATTGTG TTATTTGGTT CTTCCATAAT TCAAATGAGC TTCGACAATG GTGGTTGGGG
TGCCATTCTA GCTAACTTGT ACGCCAGAAA GGCGGATATC GTCTTGCGTG GATACTCAGG TTGGAATTCA AGAAGGGCTT
TGGAAGTTAT GGATGAAATT TTTCCTAAGG ATGCTAGTGT ACAACCATCA TTGGTGATTG TATACTTTGG TGGTAATGAT
TCTATCGATC CTCACCCATC TGGCCTTGGT CCTCATGTGC CCCTCCAAGA ATATGTTGAA AACATGAGGA AGATTGCTAA
TCATTTAAAG AGTCTTTCGG ATCACATTCG TGTCATATTT CTCACCTCTC CTCCGATTAA TGAAGAACAG CTTCGCAGAA
AGCTCAGTGC AACGCAATCA GGAAGGAGCA ACGAGTCATG TGGAGTATAT GCAAACGCAT TAATGGAGCT TTGTGAGGAA
ATGAATTTGA AGGCTATTAA TCTCTGGTCT GCAATTCAGG CCAGGGAAGA TTGGTTAGAC GTTAGCTTTA CGGATGGAGT
TCATCTGTCA GCTGAAGGAA GCAAGGTGGT GGTGAAGGAA ATATTAAGGA TTCTCAGGGA AGCAGATTGG AAAACCAGTT
TGCATTGGAT GTCAATGCCA ACAGAATATG CAGAAGATTC ACCATATTAT CCTCCCACTC CTGATGGAAC TAAAACCATA
AATGTTTCTC ACATTGTCTC CCGAAGGTGT TTGCAGTGGG ATATATAA

>Vigan.04G137700.01
MAGPLRPQIV LFGSSIIQMS FDNGGWGAIL ANLYARKADI VLRGYSGWNS RRALEVMDEI FPKDASVQPS LVIVYFGGND
SIDPHPSGLG PHVPLQEYVE NMRKIANHLK SLSDHIRVIF LTSPPINEEQ LRRKLSATQS GRSNESCGVY ANALMELCEE
MNLKAINLWS AIQAREDWLD VSFTDGVHLS AEGSKVVVKE ILRILREADW KTSLHWMSMP TEYAEDSPYY PPTPDGTKTI
NVSHIVSRRC LQWDI*