VIGGS:GBrowse

Vigan.04G140300.01

Basic Information:

Name:	Vigan.04G140300.01 Multiple alignment Variant Information
Position:	Chr04:17494186..17496256 (+ strand)
Length:	2071

Functional Information:

Description:	Similar to mitochondrial inner membrane protease subunit 2-like isoform X3. [XP_004511437.1, Cicer arietinum]
GO:	Biological Process: proteolysis (GO:0006508)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: serine-type peptidase activity (GO:0008236)
InterPro:	Peptidase S26A, signal peptidase I (IPR000223)
	Peptidase S24/S26A/S26B/S26C (IPR015927)
	Peptidase S24/S26A/S26B (IPR019759)
	Peptidase S24/S26, beta-ribbon domain (IPR028360)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:5.75,6.12,6.58,4.41,11.70,13.74,10.50,5.25
Arabidopsis thaliana homolog:	AT3G08980.1

Automatic updates:

Name:	NM_001249028 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max mitochondrial inner membrane protease subunit 2-like (LOC100527429), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:17494186..17494202 (+ strand)
Length:	17
Type:	five_prime_UTR

Position:	Chr04:17494203..17494368 (+ strand)
Length:	166
Type:	CDS

Position:	Chr04:17494454..17494526 (+ strand)
Length:	73
Type:	CDS

Position:	Chr04:17494924..17495089 (+ strand)
Length:	166
Type:	CDS

Position:	Chr04:17495773..17495883 (+ strand)
Length:	111
Type:	CDS

Position:	Chr04:17495884..17496256 (+ strand)
Length:	373
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G140300.01
GATGTGCACC TAAACACATG GGGTCAAGCA GTTTTCTATG GAACTGTACT AAAAAATTTG TCACAGCTGC TGTCATCACT
GTGACTGTGT CTGATCGTTT TGCGACAGTT GTTCCTGTTC GAGGTGGCTC TATGTCTCCC ACATTAAATC CTAAAACTGG
TTCTCTGATG GAAGATGTTT TTGATGACTA TGTTTTTGTT GAGAAATTTT GCCTTTTGGG GTACGAATTT TCAAATGGCG
ATGTGGTGGT CTTCCGCTCC CCAACGAATC ACAAGGAGAC ACACATAAAA AGAATAGCTG CATTACCTGG TGAATGGTAT
GGCACTCATC ATAACAACGA TGTGATTCGG ATCCCATTAG GACATTGTTG GGTTGAGGGA GACAACTCAG CCTCTAGCAT
TGATTCAAAG TCATTTGGAC CGATTCCTTT GGCCCTAATT CGGGGAAGGG TTACCCATAT TGTGTGGCCT CCTCAAAGAA
TAGGAGCTGT CAAGAGTACT CCACCACAAA GATTATCTTC TGTATCGGAA TAAGACTATT TTCGTTTCTG TATAATTGGA
TCCCACCTCT ATTGTTTAGT GTCCTCAAAT AATAGATGTG AAAGAACTAC TCAAAAGAAT CTGACGTGGT TCCCTTGGAT
GGGGAAAACG ATTGTTATTA CTGAAGTTGT GTCACGGGAA AGGGGACTTA CATAACCTGT TGTTGATTTG CCTTAAACCT
TGATTACTTA AAGTAGGTAC TGTTAGATAT ATTATATCTT TTATCTTTAT CTTTTATCTT TTAGTTAGTT TGTTATTATT
TCTTATTTGT ATTTTGGGCT TAGCCCATAT TTCTTTTATT ATAAATAGAG AACCCTATGT GTGTATTTAA CACAAGGGAG
ATTAATCTCA TATATAATTT TCACTA

[show][hide][copy]CDS

>Vigan.04G140300.01
ATGGGGTCAA GCAGTTTTCT ATGGAACTGT ACTAAAAAAT TTGTCACAGC TGCTGTCATC ACTGTGACTG TGTCTGATCG
TTTTGCGACA GTTGTTCCTG TTCGAGGTGG CTCTATGTCT CCCACATTAA ATCCTAAAAC TGGTTCTCTG ATGGAAGATG
TTTTTGATGA CTATGTTTTT GTTGAGAAAT TTTGCCTTTT GGGGTACGAA TTTTCAAATG GCGATGTGGT GGTCTTCCGC
TCCCCAACGA ATCACAAGGA GACACACATA AAAAGAATAG CTGCATTACC TGGTGAATGG TATGGCACTC ATCATAACAA
CGATGTGATT CGGATCCCAT TAGGACATTG TTGGGTTGAG GGAGACAACT CAGCCTCTAG CATTGATTCA AAGTCATTTG
GACCGATTCC TTTGGCCCTA ATTCGGGGAA GGGTTACCCA TATTGTGTGG CCTCCTCAAA GAATAGGAGC TGTCAAGAGT
ACTCCACCAC AAAGATTATC TTCTGTATCG GAATAA

[show][hide][copy]PROTEIN

>Vigan.04G140300.01
MGSSSFLWNC TKKFVTAAVI TVTVSDRFAT VVPVRGGSMS PTLNPKTGSL MEDVFDDYVF VEKFCLLGYE FSNGDVVVFR
SPTNHKETHI KRIAALPGEW YGTHHNNDVI RIPLGHCWVE GDNSASSIDS KSFGPIPLAL IRGRVTHIVW PPQRIGAVKS
TPPQRLSSVS E*