VIGGS:GBrowse

Vigan.04G142600.01

Basic Information:

Name:	Vigan.04G142600.01 Multiple alignment Variant Information
Position:	Chr04:17751659..17752790 (+ strand)
Length:	1132

Functional Information:

Description:	Hypothetical protein.
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.43,4.60,5.47,0.23,1.53,10.57,4.26,2.71

Automatic updates:

Name:	NM_001248633 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527657 (LOC100527657), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:17751659..17751854 (+ strand)
Length:	196
Type:	five_prime_UTR

Position:	Chr04:17751855..17752137 (+ strand)
Length:	283
Type:	CDS

Position:	Chr04:17752433..17752578 (+ strand)
Length:	146
Type:	CDS

Position:	Chr04:17752579..17752790 (+ strand)
Length:	212
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G142600.01
ACAAATGTGT AAAGTTACAA CATTTCGAAT GGTGCTTTAT GCTTATGTGA AATGTATAAT ATTATATAAG AAAAGGGGCA
TATGAAGTTC TACATGTTGG AACCAGAATT TGTTTATCTC TTATTCCAAC CATTTTTGGT AAAAAAAGGC TTCTAAATCC
ATACACAACA GAAAATTTGT GCCTTCGTCT TGAAGCATGG AAGATCATGG GCAGAACCCA AGGAAAAGAC ACAATGTTTT
TGGTGTGTTC GTGGATAAAT CACTTGGTCA CCCATCTTCT GTTGCAGAGG ACCATGATCC TAAGAAGCTT AAACACAATT
CTGAAGCCCC ATTATCATCA ATAGATCACC AAGCACCTGC CTTAGCTCTT CCCAATATGT TGGTTTCTGC TTTTGAGGAG
AACACCACAG ATGGTATCAA ATTTCAACTC TTTGTGAGCA AATCTTACAG TGCATCCACT TCCACTTCCC CTCCACCAGT
ATACACATTG AAAGTCACAA GTGCTTCAAA CAACAATACG GAAGTTGAAC CTGCAGGGAA CATAGCTGAT AAAGGAGTAG
CACCAGTGTT GACAGAAACG AGAATAGTAG CTGAGGGTCA ATTTATGCTA CGCTCTAGGC TCTAATATTA TCTTTGAAGC
TTGTCAAGTA CTTCAACTTA GAAGGTGTTC ATTTAAGTTT GTTAATGCAA TACTTTCCAA TACAACTATT ATATTTTTCA
GTCTTTGTTT TCTATTAGCT TTACCCTGTA AGAAAATATG GATTTATGGA GTAAGCAATG CTCTATTCTC GTATCATTTC
TGGAACTTAT AATAATCAAT TCAAATGCGT TGCCAAA

[show][hide][copy]CDS

>Vigan.04G142600.01
ATGGAAGATC ATGGGCAGAA CCCAAGGAAA AGACACAATG TTTTTGGTGT GTTCGTGGAT AAATCACTTG GTCACCCATC
TTCTGTTGCA GAGGACCATG ATCCTAAGAA GCTTAAACAC AATTCTGAAG CCCCATTATC ATCAATAGAT CACCAAGCAC
CTGCCTTAGC TCTTCCCAAT ATGTTGGTTT CTGCTTTTGA GGAGAACACC ACAGATGGTA TCAAATTTCA ACTCTTTGTG
AGCAAATCTT ACAGTGCATC CACTTCCACT TCCCCTCCAC CAGTATACAC ATTGAAAGTC ACAAGTGCTT CAAACAACAA
TACGGAAGTT GAACCTGCAG GGAACATAGC TGATAAAGGA GTAGCACCAG TGTTGACAGA AACGAGAATA GTAGCTGAGG
GTCAATTTAT GCTACGCTCT AGGCTCTAA

[show][hide][copy]PROTEIN

>Vigan.04G142600.01
MEDHGQNPRK RHNVFGVFVD KSLGHPSSVA EDHDPKKLKH NSEAPLSSID HQAPALALPN MLVSAFEENT TDGIKFQLFV
SKSYSASTST SPPPVYTLKV TSASNNNTEV EPAGNIADKG VAPVLTETRI VAEGQFMLRS RL*