GBrowse Details

Vigan.04G155300.01

Basic Information:
Name: Vigan.04G155300.01
Multiple alignment
Variant Information
Position: Chr04:21296591..21299916 (- strand)
Length: 3326
Functional Information:
Description: Similar to RING/FYVE/PHD zinc finger superfamily protein. [XP_007026837.1, Theobroma cacao]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-CH-type (IPR011016)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.59,2.25,3.86,3.95,3.46,4.02,1.48,4.26
Automatic updates:
Name: NM_001254506 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max C4HC3 zinc-finger like motif-containing protein (LOC100808666), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:21296591..21297023 (- strand)
Length: 433
Type: three_prime_UTR
Position: Chr04:21297024..21297264 (- strand)
Length: 241
Type: CDS
Position: Chr04:21299029..21299480 (- strand)
Length: 452
Type: CDS
Position: Chr04:21299481..21299916 (- strand)
Length: 436
Type: five_prime_UTR


>Vigan.04G155300.01
CACACACTCC TTTATCAATG CAATCTCGTG GGAGTTTTTC TGTGCTCCCA CAGCACCTTT GTTTGTGTTG CTGTTGGCAG
GGTCACTGTC TCTGCCTTCT TCCACCGCAT CAGTACTCTT CGTCCCATCA TTCACACCCT TTCTCTCTCC ATTCACAGTG
AAAAAAAAGG ATGCAAATTT CCTCACCCCC TTCCAAAACT TGAAACTTTT GGAACTTTGC ATTGATGGGG TTAAAGGGAA
TGCTCTCCTA ATCCAGTTTC TCAATTCTTT AACCCCAAGT TCCATTTTTT TTTCTTATAT CATTCTTTTA TATGTGTACT
CCCTACTTTC CAAATTTTGA GGCATTTCAT GTTTTCTGTC TCAAGCTCTG AGAAAACGTT ATTGTTGTTG TTGTTATTAG
GCTGTTTGTT TGTTTTGGTC TCTTGTCGGT CGAAAAATGG CCACCTTGCA GATGTCCCAT GTTGATTTGG AGCAAGGAAA
CCATCGCCGT TCGGTTGTTG GTAGTGATGC GAGCGTTGAA GGGAGCTTAT GCTTCTCTGA TGCTGATGAT GGGTCTTGCT
ACTCTCGTTT CTACTCAACA AATGGTGGTT CATATGATGA TTACAGCTTT GATTGTGTTT CTGATCCTGA GGCTGGGGGT
GTTCCTCATT CTGGGAGAGC TTCTTCTGTT TCTGAGTGCT CTGTGGAGTT GGAAACTAGA ACTGGGGTTC CTGAGATCAA
GGTGCATTTG GCTAAAGTGG AGAAGGATTG TAGGATTTGT CACATGGGTT TGGTGAGCGA TAGCCATGAG TCTGGTGCCC
CCATAGAATT GGGTTGTTCC TGTAAGGATG ATTTAGCTGC TGCTCACAAG CACTGTGCTG AGGCCTGGTT CAAGATTAAG
GGAAATAGGA CTTGTGAAAT CTGTCATTCT GTTGCTCGGA ATGTTTATGG AGGAAACGAG GATTCGACAG AGCATGTTAG
CGACGGTAAC AATGGTACTA CAGCAGCAGC CACAGTCTCC ACAACTGCTC CTTTTACAGA ACCTCGTAGA TTTTGGCATG
GCCATCGCTT CCTCAATTTC TTGCTTGCTT GTATGGTTTT TGCTTTTGTG ATATCATGGC TTTTCCACTT CAATGTGACA
TCATCGTAGG ATTTCTTCAG GCAGTTTTAT TTACAATTTG AAGTTGAGTA GGGAGCAAAC AAGAGAGATG AAAAGAAAAA
AAGAGAAGGA AAAAAGGAAA CCCTTCTCGA AGATCATGGA AAACAATTTC TTAGAGAAAG AATCCTTGTA GAATTTGAGA
CATTGTTGGG TTTATAAAGA TAGCTGCATA ACTTCCTTTC CATGCAAATA GACATTTTCT GTTGTGCATT CGCCATAGGC
TCTCTTGTTC TGTCTTTCAG AGTCAATGCA ATTTGTGAAC AAATACTAGA ATGTTTATTC AAATGTAAAT TACATATTTA
TATTGTATTG TTACTTCATT GTCATTTTGT ACGGGGTGAT TTCTTAGTTC ACTTGTAAGA TTTGCTGACA TTGCTTCTCT
AATCAATAGT AGAAGAAACT ACATCCATGT TTTCCACTTC TT

>Vigan.04G155300.01
ATGGCCACCT TGCAGATGTC CCATGTTGAT TTGGAGCAAG GAAACCATCG CCGTTCGGTT GTTGGTAGTG ATGCGAGCGT
TGAAGGGAGC TTATGCTTCT CTGATGCTGA TGATGGGTCT TGCTACTCTC GTTTCTACTC AACAAATGGT GGTTCATATG
ATGATTACAG CTTTGATTGT GTTTCTGATC CTGAGGCTGG GGGTGTTCCT CATTCTGGGA GAGCTTCTTC TGTTTCTGAG
TGCTCTGTGG AGTTGGAAAC TAGAACTGGG GTTCCTGAGA TCAAGGTGCA TTTGGCTAAA GTGGAGAAGG ATTGTAGGAT
TTGTCACATG GGTTTGGTGA GCGATAGCCA TGAGTCTGGT GCCCCCATAG AATTGGGTTG TTCCTGTAAG GATGATTTAG
CTGCTGCTCA CAAGCACTGT GCTGAGGCCT GGTTCAAGAT TAAGGGAAAT AGGACTTGTG AAATCTGTCA TTCTGTTGCT
CGGAATGTTT ATGGAGGAAA CGAGGATTCG ACAGAGCATG TTAGCGACGG TAACAATGGT ACTACAGCAG CAGCCACAGT
CTCCACAACT GCTCCTTTTA CAGAACCTCG TAGATTTTGG CATGGCCATC GCTTCCTCAA TTTCTTGCTT GCTTGTATGG
TTTTTGCTTT TGTGATATCA TGGCTTTTCC ACTTCAATGT GACATCATCG TAG

>Vigan.04G155300.01
MATLQMSHVD LEQGNHRRSV VGSDASVEGS LCFSDADDGS CYSRFYSTNG GSYDDYSFDC VSDPEAGGVP HSGRASSVSE
CSVELETRTG VPEIKVHLAK VEKDCRICHM GLVSDSHESG APIELGCSCK DDLAAAHKHC AEAWFKIKGN RTCEICHSVA
RNVYGGNEDS TEHVSDGNNG TTAAATVSTT APFTEPRRFW HGHRFLNFLL ACMVFAFVIS WLFHFNVTSS *