VIGGS:GBrowse

Vigan.04G156700.01

Basic Information:

Name:	Vigan.04G156700.01 Multiple alignment Variant Information
Position:	Chr04:21721068..21724426 (+ strand)
Length:	3359

Functional Information:

Description:	Similar to Uncharacterized protein. [G3ECQ7, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.51,8.59,11.20,18.30,30.22,23.06,11.46

Automatic updates:

Name:	NM_001254056 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein RABA5b-like (LOC100808333), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:21721068..21721274 (+ strand)
Length:	207
Type:	five_prime_UTR

Position:	Chr04:21721275..21721608 (+ strand)
Length:	334
Type:	CDS

Position:	Chr04:21723868..21724175 (+ strand)
Length:	308
Type:	CDS

Position:	Chr04:21724176..21724426 (+ strand)
Length:	251
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G156700.01
CAGCACTATC CCTAAAACCC CGCCACCAAT CACGCCAAAA TTCCAAAATA AAATCCGAAA AACAAAACCC ATTTCACTAC
ATAACTCACT TCACGTTCTT CTCCTTTTAT CTTCCCTTCA CACACGCCAA CTACGTGACA CCCACTCACT CCTCCTGTCA
TCACATAACA ACCTTCAACC ATTCCCTTTC TCGCTCAACC CTCGCTCATG GCAGAGAACG GCGACGGCGC CGAGGAGTAC
CTCTTCAAGG TCGTCCTCAT CGGGGACTCT GCGGTCGGCA AGTCCAACCT CCTGTCGCGC TTCGCGCGGA ATGAGTTCGA
CAGCAACTCC AAGGCCACCA TTGGGGTGGA GTTCCAGACG CAGGTGGTGG AGATCGACGG CAAGGAGGTC AAGGCGCAGA
TCTGGGACAC TGCCGGCCAG GAGCGCTTCC GAGCCGTCAC TTCTGCTTAC TACAGAGGCG CCGTTGGAGC GCTAGTCGTC
TACGATATCA GCAGGAGAGG CACCTTCGAC GGCATCAAGC GATGGCTCGA AGAGCTCACT ACTCAAAACG ACAGCACCGT
AGCAAGAATG TTGGTGGGAA ACAAATGCGA CTTGGAGAAT ATTAGAGAGG TGAGCACAGA AGAAGGCAAA AATCTTGCAG
AAGAAGAGGG CCTGTTCTTT ATGGAGACAT CTGCACTCGA TTCTACGAAT GTCCAAACAG CTTTCGAGAT TGTTATCCGT
GAAATATACA ACAATATCAG TCGTAAAACA TTGAACTCTG ATTCTTACAA GACTGAGTTG TCTGTGAATC GAGTAAGCTT
GGTTAATGGG GCAGGATCAA AGCAAGGTCT TTCTTGTTGT GCTCGATGAG CTTTTATCTT AACTCGGATT CGGTGCTTCT
TTGGATCTTG CGAGAGTAGA TTCTTGTTCT TTACTTTTTT TTCCCATGTT ACGATGGCTG CCATATTTTT GTTTTCCTTT
TTCTTTCAAC CTGCAAATTT GCAGTGCTTG GTACCTGTCT CACAAGAAAA AAATAAGGAG ATTTACTCTT ACATGAATGA
TTTTTAAATA TATTTTGTAT TTGTTAAGAA CCATAGGATA TGCCAACTGA GTTTGTCAAG

[show][hide][copy]CDS

>Vigan.04G156700.01
ATGGCAGAGA ACGGCGACGG CGCCGAGGAG TACCTCTTCA AGGTCGTCCT CATCGGGGAC TCTGCGGTCG GCAAGTCCAA
CCTCCTGTCG CGCTTCGCGC GGAATGAGTT CGACAGCAAC TCCAAGGCCA CCATTGGGGT GGAGTTCCAG ACGCAGGTGG
TGGAGATCGA CGGCAAGGAG GTCAAGGCGC AGATCTGGGA CACTGCCGGC CAGGAGCGCT TCCGAGCCGT CACTTCTGCT
TACTACAGAG GCGCCGTTGG AGCGCTAGTC GTCTACGATA TCAGCAGGAG AGGCACCTTC GACGGCATCA AGCGATGGCT
CGAAGAGCTC ACTACTCAAA ACGACAGCAC CGTAGCAAGA ATGTTGGTGG GAAACAAATG CGACTTGGAG AATATTAGAG
AGGTGAGCAC AGAAGAAGGC AAAAATCTTG CAGAAGAAGA GGGCCTGTTC TTTATGGAGA CATCTGCACT CGATTCTACG
AATGTCCAAA CAGCTTTCGA GATTGTTATC CGTGAAATAT ACAACAATAT CAGTCGTAAA ACATTGAACT CTGATTCTTA
CAAGACTGAG TTGTCTGTGA ATCGAGTAAG CTTGGTTAAT GGGGCAGGAT CAAAGCAAGG TCTTTCTTGT TGTGCTCGAT
GA

[show][hide][copy]PROTEIN

>Vigan.04G156700.01
MAENGDGAEE YLFKVVLIGD SAVGKSNLLS RFARNEFDSN SKATIGVEFQ TQVVEIDGKE VKAQIWDTAG QERFRAVTSA
YYRGAVGALV VYDISRRGTF DGIKRWLEEL TTQNDSTVAR MLVGNKCDLE NIREVSTEEG KNLAEEEGLF FMETSALDST
NVQTAFEIVI REIYNNISRK TLNSDSYKTE LSVNRVSLVN GAGSKQGLSC CAR*