GBrowse Details

Vigan.04G158400.01

Basic Information:
Name: Vigan.04G158400.01
Multiple alignment
Variant Information
Position: Chr04:22032368..22042019 (+ strand)
Length: 9652
Functional Information:
Description: Similar to Signal recognition particle 9 kDa protein. [V7B8B0, Phaseolus vulgaris]
GO: Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614)
Biological Process: negative regulation of translational elongation (GO:0045900)
Cellular Component: signal recognition particle (GO:0048500)
Molecular Function: 7S RNA binding (GO:0008312)
InterPro: Signal recognition particle, SRP9 subunit (IPR008832)
Signal recognition particle, SRP9/SRP14 subunit (IPR009018)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:20.76,17.16,7.69,7.75,8.46,9.11,0.16,7.67
Arabidopsis thaliana homolog: AT3G49100.1
Automatic updates:
Name: NM_001249786 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative signal recognition particle SRP9 (LOC100500606), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:22032368..22034537 (+ strand)
Length: 2170
Type: five_prime_UTR
Position: Chr04:22034538..22034609 (+ strand)
Length: 72
Type: CDS
Position: Chr04:22034865..22034933 (+ strand)
Length: 69
Type: CDS
Position: Chr04:22041097..22041190 (+ strand)
Length: 94
Type: CDS
Position: Chr04:22041415..22041491 (+ strand)
Length: 77
Type: CDS
Position: Chr04:22041492..22042019 (+ strand)
Length: 528
Type: three_prime_UTR


>Vigan.04G158400.01
ATTTAATTCA AATTTATTCA AAAAAAACTG TTTATAAACA TTGTTAAGTT TTTAGAATGA ATTGAAATAA AAATAAAAAT
TTAAATTGCC TATTTATAAA AATGATAATG TTTAAGGATC TTGGAGTAAA ATTAAAGTTA CATGTATACG TTTACAAATG
TGAATTTAAA GTGAAACGGT GCGCACAAGC AGCAGCTGCC TTAGGGTCTC TTCCCCTCGT TTTCATTTGA AGAAAGAACC
CAAAGCTAGG GCAAAGCTAA AGGTGAGAGA GGAAAGCTCC CAATGTTCAA GCCATTTAGC CAGTGCTCCA AACGTCACTG
ACCGGTGGAG AAGAAGAGCT GACCGGAGCT GCCACGTGGA TAGGAGGATC GACGGTCAGA GTAAAGCAAG GAAGCAGATA
AACGGAAGAG AAGAATAAAG CGTCACAAGC AAGTTTCCTC TTTTCCTTTT TTTCATTTTC TCTTTTCTTC AGACCCTATA
TAAAGGGGTG ATGGGTGACA GGCACCATTC TTCGATTCTA GATTTCACTG AGTTGCGAGG GTGACAGGCC GTGATTTTCG
GTGATTTCTG GTATCATGTA CTTTTATCTT CAAAGTTTAA TGCAATTCTG ATTCCTTTTA TGGATTCTTT TGATTGGTTG
ATAATAGTTT AGGTTTTATT ACTTGATTTC ATTTGCTGTT CATGATGAGT TGTTTCTGGC AGTTTGTTTT CATTGAAAAT
TTATAGGTTT TTAGAATTAG ATTGTTTGTT TTAAGTGCAT TTAGACTAGA CTGTGCATTT GATATTGATT AAAAGCTTGC
ATCAGAGTCA CAATTGCTAT GGTTTGGTAC AGAGAGTATA CAAGAGGGTA TGATTTTACA GGATGTCTTC CTGAGTTGTA
AGTGAATACT ATTCTGCACT AATCTTTGCT TTTTGGTTTC TGATTCATGA TTTTAACCAA TGAGTTTGTT CTGCTCCTTA
GTTAAGTGTT ACTTGTTAAA TTGTTCTTCA TTTTAGTTTG AGCATTCTAT CTTCAACCTG TAGGTCTAGT TACTTGTTTT
CTATTTTTTT TAAATTGCAA CTCTTTCTCA TAGATTAGAA ATTCTTTTCC ATGTTAATTT CATTTTTTTA TGTTAATGTG
GATTGGAAAT TAATATAGTT TTAGTTTAGA TTTTTCTGTA TTTTCAATTT CAGATTTTAT TCTTTGATCA TGATACATAT
AGTCTTAAGT TTTGTTTCAG TTGTGTGTAA ATAGTAATAG ATCCAGTTTA ATGAGTGACA GTTAAATAGT TTTTCATATA
GGATGTTGTT CATTTAGAAT AGTTTAGTTT TGACATTTTC TCTTTTGATT AATTTCATTT TTTTCTTTTA AACAGTTTAC
AGATTTTAAA TTCTCTTTTC CTTTATAAAT TTCATTCTTT CATTTTTATT TCCCCACCTT GCATTAGTTA ATAGGTAGTA
AATAAATAAA ATACAAGAGT TAACTTTACA TATCTGAACT TAATTGTACT GAGTCCTTGG ATTGATGATA CCTAGGTTGA
CCCCTATACT ACATTAGTAG GGAAACTTAG TTTGTTCTGA TTTTAGGCGA CAAAAATCAG TTTAACAGGG GCTTTTGTAT
TTTTAGCTAG TCACTTGTGA GTGTGTGTTT TTTCAAAGTG TAGGCTTAAA TGGCATGCAA TGTGGGTTTT GGATCCCTGA
AGGAACCTGG TACTTCTTGA ATGGCTTCTC TTGTGATGTT CCTCTCTTTT AATAGGATAA CTTGCATTGT TCTTTGCATA
ATTTACTAAG AAAGTAGGGT TGTAGACAAA TCGATGATGG ATAAGAATGA GATATTCCTT CAATATAAAT CTAATTTGTT
TTTTCTGACA AGTTTTTAAT TTTATTATAA ACGCGAGTTT CTTTTTGCCG GAGAATGTGG ATTGGTTCAT TCGGTTGATA
ATATTCGTGT GAAATTTCGG GAGGTGTGAG ACTATGCATT TGAATTTGTT CTTTTTTTAG CTTTGTTGAT ATAATGAAAT
TTAATTGCTG ACTATAGATC CTAATTTTTC ATCATATGTA CACTTTGTTA TCAATTTAGT GACAATGGTT TTTTATATTT
TCATTTTTTT CTCATTGACA TGCAGGTGAA CTTAGTTGAC CAGAGCTTGA CAACTGGCAG AAAATTGTTT CGAAGTCTCT
GTCTGGTGCG ATGGTTTACA TAACTGAGTG GGACAAATTT GTGGAACAAT CCATTCAGTT GTTCCGTGCT GATCCTGATT
CTACACGGTA TGTCATGAAG TACAGGCACT GTGATGGCAA GTTGGTACTT AAGGTCACTG ATAACCGGCA GTGTCTAAAG
TACAAGACAG ACCAAGCACA AGAGGCTAAG AAGATGGAAA AACTGAACAA TATGTTCTTT GCTTTGATGG CCCGTGGTCC
TGATGTTGAT CTATCAGAAG TCACTGGAAA AGAGCAAATG GATGCTCAAC CAAGCAAGAA AGGAAGAGGA AGGAAGCAAT
AACTTGCTCT TTGCGAGACA TGATGGTTTT GAGTCAGAGG ACTTTCTAAG AATTTGAACA GTTATACTTT TCCCGATCTA
ATTATTACTT CTTCAGATTC TATGATGAAA GTGGTTGTAT ATTGAAGTTT TGAAGTCTGA ATTTCTGATC TTTTGGAAGT
CTTGAGTATT ACAGAATTTA GTTATGCCAC CAAGATTTAC TGTGCATCGT TACCGTTATT GAATCCTTTT ATATCCAATG
GTGCAGCCAA ACCACTGTGT CAGCAGTTCA TCATCAAACT AGAATTTTCT TACTAACTTA GCAATTACAA AATATTGTTG
TGTGCTTCTA TCTAAATGAG ATTGGTGGCC AAATTGTTGA AGCTACAACA GGCTAAGGCC AACTTGCAGG ATTCATAGTT
CATAGTCATT GGGAGTGAAT ATTGGATGCC ATCCCCCAAG GAGTATGGAA TTTTAGATCC CATTGATTAC ACGTTATTGG
TATGGTATGG GATTGACTGC TGCTTCCAAC ACCTTTTTTT TTTTCCTGCA 

>Vigan.04G158400.01
ATGGTTTACA TAACTGAGTG GGACAAATTT GTGGAACAAT CCATTCAGTT GTTCCGTGCT GATCCTGATT CTACACGGTA
TGTCATGAAG TACAGGCACT GTGATGGCAA GTTGGTACTT AAGGTCACTG ATAACCGGCA GTGTCTAAAG TACAAGACAG
ACCAAGCACA AGAGGCTAAG AAGATGGAAA AACTGAACAA TATGTTCTTT GCTTTGATGG CCCGTGGTCC TGATGTTGAT
CTATCAGAAG TCACTGGAAA AGAGCAAATG GATGCTCAAC CAAGCAAGAA AGGAAGAGGA AGGAAGCAAT AA

>Vigan.04G158400.01
MVYITEWDKF VEQSIQLFRA DPDSTRYVMK YRHCDGKLVL KVTDNRQCLK YKTDQAQEAK KMEKLNNMFF ALMARGPDVD
LSEVTGKEQM DAQPSKKGRG RKQ*