GBrowse Details

Vigan.04G164100.01

Basic Information:
Name: Vigan.04G164100.01
Multiple alignment
Variant Information
Position: Chr04:23099012..23106983 (+ strand)
Length: 7972
Functional Information:
Description: Similar to Uncharacterized protein. [K7MSR4, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Cellular Component: endoplasmic reticulum (GO:0005783)
Cellular Component: integral to membrane (GO:0016021)
InterPro: B-cell receptor-associated 31-like (IPR008417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.22,1.58,1.90,1.01,3.27,4.77,3.41,2.54
Arabidopsis thaliana homolog: AT5G48660.1
Automatic updates:
Name: BT091678 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-20A9 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:23099012..23099526 (+ strand)
Length: 515
Type: five_prime_UTR
Position: Chr04:23099527..23099812 (+ strand)
Length: 286
Type: CDS
Position: Chr04:23106298..23106668 (+ strand)
Length: 371
Type: CDS
Position: Chr04:23106669..23106983 (+ strand)
Length: 315
Type: three_prime_UTR


>Vigan.04G164100.01
CACGAGGCGC GGTGCTGTTC AAATGCTTGA CTCAATTCTG CTTTTTTATT TTTTTTGTTC CTTAACTCCT TTCTCAATGT
ACCAAACCCA TTGTTGAACC TTCGCATACT CAGATCAAAC TCTCTACACG AACAAGTCTC TCTCTAAAGG GGTTTAAAGA
CATCTCCTTT GCAAAGAATT TTGAGCCTGT TCCCTCGAAA CTATTGCATG TAAAGACTCA AGCTTTGATG CTGGATATTC
GTATTTCGTT TGTACATTCA TGTGGGTCAT TGTGTGGATG CCTCAGTTTC AGCAAAGGGA TAAAAGGGTC TGTGTGAGTG
TGACTTGAGG AGGGTCTTTC CTTCAATTCA GTTCAAGGGT AGCCTTGTGT TCTTTTCATA TTGGAGCATG AGTTTGTTTG
TGGGGTGGAT TTTAATTTTC AAACCGTAAG CGATATCACC TTTTTTTGGA AAAAAGTAAG GATTTTGCAA TTGTAGTGAA
GTGGGAAGCA TTTGTTTTAG TTGAGGGAGC AAAGGATGAT TCAGCTTTTG TTCTTAGTAA TTTTTGCTGA GGTGGTTCTG
GCATTTCTTT TGTTGGTGAA GATAGGACCC TTGAGAGATC TTGTTATAAA GAGCCTGGAT CAATTGAAGA TGGGTAAGGG
TCCAGCTACA GTAAAAACTA TTGCAGGTAC CATGTCTGTG ATTCTCCTTT CAAGTCTCAT GAGCATTGTA AAGGTCCAGA
ACAAAGGTGC TAAACTTGGA ACGATGTCGC CCATGGATCA AGTTCTGTGG AGAACTCACT TGCTGGAGGC TTCCCTCATG
GGTTTTACAT TATTCCTTGG ATTTCTTATT GATCGAATCC ACCATTATCT TCAAAAACTT GTTAATTTAA GGAGTAATGC
AAGAACTTCA AACCAAGAAT TAGAAAACCT TAAAAAGGAA ACTGTGCAAC TTAAAGAAAA GGATGAGAAA GCTTCGAAGG
AGATGCAACA GCTTAAGGAA GAACTTTCAC AGGTGGCCGA AAGTTTGAAA AAGATAAAAT TGGAATCTGA AGAGAAGGAC
AAGAAAGTTG AGACTGCTGA AGCACATGTT GCTTCCCTCC AAAAGCAAGC TGCAGATCTA CTACTTGAAT ACGACAGACT
CTTAGAAGAA AACCAAAATC TGCAGGCTCA AACACTGGGA CACAAGAGTT GAGGAATGGT TGAGATGCAT TGATAAACAA
ATTTTGGGGA TGAGATTTCT TCAGGGCCAT CCTTGGTTAG GTTGCAAAAT CTTTATTTTG GAAAAAAAAA ATCTTTTGTT
CCTTTTTGAA AATGCAGCAT TGACCAAAGG AGCTCTGTGC TAAGTTTATA AGTTTTGCAG TTCTTTTTAG TTTGTTCTCG
ATTTAGTTAT CAGATTATTG CGTAACAAAT TCACCATCTT GGTTTTTTGT TGTCTTTACC TCTTTTATTG TTTGGATGCA
TGCTGAAGTA TTTTTGGTGG CACAAATAGT CATCAAGAAT TACAAAG

>Vigan.04G164100.01
ATGATTCAGC TTTTGTTCTT AGTAATTTTT GCTGAGGTGG TTCTGGCATT TCTTTTGTTG GTGAAGATAG GACCCTTGAG
AGATCTTGTT ATAAAGAGCC TGGATCAATT GAAGATGGGT AAGGGTCCAG CTACAGTAAA AACTATTGCA GGTACCATGT
CTGTGATTCT CCTTTCAAGT CTCATGAGCA TTGTAAAGGT CCAGAACAAA GGTGCTAAAC TTGGAACGAT GTCGCCCATG
GATCAAGTTC TGTGGAGAAC TCACTTGCTG GAGGCTTCCC TCATGGGTTT TACATTATTC CTTGGATTTC TTATTGATCG
AATCCACCAT TATCTTCAAA AACTTGTTAA TTTAAGGAGT AATGCAAGAA CTTCAAACCA AGAATTAGAA AACCTTAAAA
AGGAAACTGT GCAACTTAAA GAAAAGGATG AGAAAGCTTC GAAGGAGATG CAACAGCTTA AGGAAGAACT TTCACAGGTG
GCCGAAAGTT TGAAAAAGAT AAAATTGGAA TCTGAAGAGA AGGACAAGAA AGTTGAGACT GCTGAAGCAC ATGTTGCTTC
CCTCCAAAAG CAAGCTGCAG ATCTACTACT TGAATACGAC AGACTCTTAG AAGAAAACCA AAATCTGCAG GCTCAAACAC
TGGGACACAA GAGTTGA

>Vigan.04G164100.01
MIQLLFLVIF AEVVLAFLLL VKIGPLRDLV IKSLDQLKMG KGPATVKTIA GTMSVILLSS LMSIVKVQNK GAKLGTMSPM
DQVLWRTHLL EASLMGFTLF LGFLIDRIHH YLQKLVNLRS NARTSNQELE NLKKETVQLK EKDEKASKEM QQLKEELSQV
AESLKKIKLE SEEKDKKVET AEAHVASLQK QAADLLLEYD RLLEENQNLQ AQTLGHKS*