GBrowse Details

Vigan.04G164500.01

Basic Information:
Name: Vigan.04G164500.01
Multiple alignment
Variant Information
Position: Chr04:23140636..23145042 (+ strand)
Length: 4407
Functional Information:
Description: Similar to Uncharacterized protein. [I1KZ55, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Sterile alpha motif domain (IPR001660)
Sterile alpha motif/pointed domain (IPR013761)
Sterile alpha motif, type 1 (IPR021129)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.52,21.04,20.62,23.79,23.40,20.11,31.05,20.33
Arabidopsis thaliana homolog: AT3G07170.1
Automatic updates:
Name: NM_001250869 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527300 (LOC100527300), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:23140636..23140934 (+ strand)
Length: 299
Type: five_prime_UTR
Position: Chr04:23140935..23141041 (+ strand)
Length: 107
Type: CDS
Position: Chr04:23142018..23142079 (+ strand)
Length: 62
Type: CDS
Position: Chr04:23142187..23142452 (+ strand)
Length: 266
Type: CDS
Position: Chr04:23143995..23144069 (+ strand)
Length: 75
Type: CDS
Position: Chr04:23144309..23144371 (+ strand)
Length: 63
Type: CDS
Position: Chr04:23144523..23144567 (+ strand)
Length: 45
Type: CDS
Position: Chr04:23144568..23145042 (+ strand)
Length: 475
Type: three_prime_UTR


>Vigan.04G164500.01
ATCCACGCCA AACGCGACCT TATTGGTTAC CACTCACTCA CCCTTTTCTT CTATCTGCGA CCCCATTGAG ACTTGATAGA
CTCTCACAAC TCCCAAATTC CAAAGCCAAT TTTTCTCTTT TTGTTTTGTT TTCTTTTTGA GGGGTGAAAT TTGCAATCTC
CAAGAAGCAG TGTTCTTATT CTCTTTCTAT CAAATTCACA GGGGTTTGAT TCTCTGGAAC CGTTTCACAA TTTGGGTTCG
TGCACCTTCA GCAAGTGTTT GTGTTTAGGT TTAGGTTTCA TTTGGAACAA ACGCAAAGGA TGTATGCTGA TCGGGTTGAG
ACTGGAACTC GGAGGTCAGT GAAAGAACGT CTTGATGGGA ATTTCCTCAC CGATTCTACT CGCCAACACA AAGTCACCGG
AAAGAGGCAG AGGCAAGATG ACAAGTGGAA ACATGATCTC TATGACGATG ATGAACCCCA GCTCTATAAT CGCAAGGTCA
CTGCTCAAGA TCTTCGTTTG AAGCTTCAAA AGAAAGGCCT GCATCCTGGA GGTCAAACTG GAAAGAGTTC TGTTCCTGTT
GAGAGGGATC TCCGTGAAAA GCTATCAGGG ACAATGACTC CACAACCTAA AAACTATGAT CCACCAAAGC CCAAAGTGAC
TGCTAAACCA AGCAGTAAAA GTATAGATGT TGAGACCCCT TCAGTACATG TCAAAAGATC AGCTAACCCA ACTCCTAAAA
AGGTGTCCCG AAAGGCTGAC TCATCACTGG ATGAATTTTT GCTGTCACTG GGTCTCGAAA AGTATCTCAT AAGTTTTCAG
GCTGAGGAAG TTGATATGAC TGCACTCAAT CATATGACTG ATGAGGATCT GAAGGCCATG GGTATACCAA TGGGACCAAG
AAAGAAGATA CTTTTAGCCT TGGAGGCAAA AGGCTGACAT CTTGGTCGTG TATTTGTATA CCCTTGTTAT AACTTACTGC
ACATTAAAAG GCTTATAATT ATGTTTATAC TTTGAACCTG GTCAAGCTTG CTTGTAATTT TTTAGAAATC CTTTTGGTGC
TTCTATTGCC ATTTCAATCT TCTTTCTTCC CATGCGTTGC TGAAAGTGGC CTAAACAAGC TATTGACATT TAAAAGTAGG
AAATCATGAA GATTAATTGA TAAGAGTTTT TTTGTTTAGC TGGAGGGACC TGGTTTGATG GGTGATGGTG ATGGTGGATG
CTTTGTAAAA TGAAGTTTGC CTGTTTTCCT TTTTTACTTT GAAACCAAAC ATGCTTTTCC TTTTTAATGT ATTCCCTTTA
TGATTTTGAA TGTCTATACA ATTTGAGTGT TTGCAAATTC ATGCGTACTG TGGATCAATT TCAATGCTGA CAATGCTAAA
TAAACTAGCT CAAGTGCCAA ATTTCCTGTG CA

>Vigan.04G164500.01
ATGTATGCTG ATCGGGTTGA GACTGGAACT CGGAGGTCAG TGAAAGAACG TCTTGATGGG AATTTCCTCA CCGATTCTAC
TCGCCAACAC AAAGTCACCG GAAAGAGGCA GAGGCAAGAT GACAAGTGGA AACATGATCT CTATGACGAT GATGAACCCC
AGCTCTATAA TCGCAAGGTC ACTGCTCAAG ATCTTCGTTT GAAGCTTCAA AAGAAAGGCC TGCATCCTGG AGGTCAAACT
GGAAAGAGTT CTGTTCCTGT TGAGAGGGAT CTCCGTGAAA AGCTATCAGG GACAATGACT CCACAACCTA AAAACTATGA
TCCACCAAAG CCCAAAGTGA CTGCTAAACC AAGCAGTAAA AGTATAGATG TTGAGACCCC TTCAGTACAT GTCAAAAGAT
CAGCTAACCC AACTCCTAAA AAGGTGTCCC GAAAGGCTGA CTCATCACTG GATGAATTTT TGCTGTCACT GGGTCTCGAA
AAGTATCTCA TAAGTTTTCA GGCTGAGGAA GTTGATATGA CTGCACTCAA TCATATGACT GATGAGGATC TGAAGGCCAT
GGGTATACCA ATGGGACCAA GAAAGAAGAT ACTTTTAGCC TTGGAGGCAA AAGGCTGA

>Vigan.04G164500.01
MYADRVETGT RRSVKERLDG NFLTDSTRQH KVTGKRQRQD DKWKHDLYDD DEPQLYNRKV TAQDLRLKLQ KKGLHPGGQT
GKSSVPVERD LREKLSGTMT PQPKNYDPPK PKVTAKPSSK SIDVETPSVH VKRSANPTPK KVSRKADSSL DEFLLSLGLE
KYLISFQAEE VDMTALNHMT DEDLKAMGIP MGPRKKILLA LEAKG*