VIGGS:GBrowse

Vigan.04G165900.01

Basic Information:

Name:	Vigan.04G165900.01 Multiple alignment Variant Information
Position:	Chr04:23311193..23313326 (+ strand)
Length:	2134

Functional Information:

Description:	Similar to Small ubiquitin-related modifier 2-like protein. [T2DN76, Phaseolus vulgaris]
GO:	Molecular Function: protein binding (GO:0005515)
InterPro:	Ubiquitin domain (IPR000626)
InterPro:	Rad60/SUMO-like domain (IPR022617)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:3.37,6.57,32.02,71.02,57.31,81.62,19.60,37.25
Arabidopsis thaliana homolog:	AT4G26840.1

Automatic updates:

Name:	NM_001248663 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305708 (LOC100305708), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:23311193..23311372 (+ strand)
Length:	180
Type:	five_prime_UTR

Position:	Chr04:23311373..23311462 (+ strand)
Length:	90
Type:	CDS

Position:	Chr04:23312817..23312966 (+ strand)
Length:	150
Type:	CDS

Position:	Chr04:23313053..23313124 (+ strand)
Length:	72
Type:	CDS

Position:	Chr04:23313125..23313326 (+ strand)
Length:	202
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G165900.01
CTCACAGACA TACACAATAT CTACATAGCG TAAAACTAAC GCACTGGCAC GTGTTTCTTG ATTTGTGTCG TTCGTACCCA
CTACGCTACT ATATATACTG AGCAAAGGTG TTGTTTTCTT TGCAATAGAA ACACACCAAA TTCTCACTGT AAGAGTACGA
ACAAGGTGTG AAGCTTGAAA ATGTCTTCAT CAGGAGGCAG AGGAAGCCAG GAAGAGGAGA AGAAGGGCTC TGATCAAGGA
GCACATATCA ATCTCAAAGT CAAGGGACAG GATGGTAATG AGGTTTTCTT CAGGATTAAA AGAAGCACTC AGCTGAAGAA
ACTCATGAAT GCATACTGTG ATAGACAATC TGTAGATTTT AGCTCAATTG CTTTCTTGTT TGATGGAAGA AGACTTAGAG
CTGAACAAAC CCCAGATGAG CTAGAGATGG AAGATGGGGA TGAGATAGAT GCAATGTTAC ACCAAACTGG AGGTGGATAT
AAATTTCTTT GAATGTATGT TATCTATTTC TGAATGCCTG AGAAACCATT GGTATTTGGT GCTTGTTTCA AGGTTTATAT
TTTGATATGA TATTTATGAT TATGATGTTA ATGTAAACAG TGGACAATTT TCAATATGAA TTTTCCATAT TTACTAATGT
TTTGTTGTTT AAAATATTGT TATAATTGTG TGGATACAGT ATTGTGGACT TTGC

[show][hide][copy]CDS

>Vigan.04G165900.01
ATGTCTTCAT CAGGAGGCAG AGGAAGCCAG GAAGAGGAGA AGAAGGGCTC TGATCAAGGA GCACATATCA ATCTCAAAGT
CAAGGGACAG GATGGTAATG AGGTTTTCTT CAGGATTAAA AGAAGCACTC AGCTGAAGAA ACTCATGAAT GCATACTGTG
ATAGACAATC TGTAGATTTT AGCTCAATTG CTTTCTTGTT TGATGGAAGA AGACTTAGAG CTGAACAAAC CCCAGATGAG
CTAGAGATGG AAGATGGGGA TGAGATAGAT GCAATGTTAC ACCAAACTGG AGGTGGATAT AAATTTCTTT GA

[show][hide][copy]PROTEIN

>Vigan.04G165900.01
MSSSGGRGSQ EEEKKGSDQG AHINLKVKGQ DGNEVFFRIK RSTQLKKLMN AYCDRQSVDF SSIAFLFDGR RLRAEQTPDE
LEMEDGDEID AMLHQTGGGY KFL*