GBrowse Details

Vigan.04G167300.01

Basic Information:
Name: Vigan.04G167300.01
Multiple alignment
Variant Information
Position: Chr04:23591181..23595207 (+ strand)
Length: 4027
Functional Information:
Description: Similar to ER lumen protein retaining receptor. [V7B459, Phaseolus vulgaris]
GO: Biological Process: protein retention in ER lumen (GO:0006621)
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: ER retention sequence binding (GO:0046923)
InterPro: ER lumen protein retaining receptor (IPR000133)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.44,16.67,31.82,22.12,32.82,23.26,41.01,24.77
Arabidopsis thaliana homolog: AT3G25040.1
Automatic updates:
Name: NM_001250817 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527553 (LOC100527553), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254600 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ER lumen protein retaining receptor-like (LOC100780011), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:23591181..23591463 (+ strand)
Length: 283
Type: five_prime_UTR
Position: Chr04:23591464..23591554 (+ strand)
Length: 91
Type: CDS
Position: Chr04:23592746..23593011 (+ strand)
Length: 266
Type: CDS
Position: Chr04:23593151..23593266 (+ strand)
Length: 116
Type: CDS
Position: Chr04:23593866..23593939 (+ strand)
Length: 74
Type: CDS
Position: Chr04:23594859..23594922 (+ strand)
Length: 64
Type: CDS
Position: Chr04:23595011..23595047 (+ strand)
Length: 37
Type: CDS
Position: Chr04:23595048..23595207 (+ strand)
Length: 160
Type: three_prime_UTR


>Vigan.04G167300.01
GCACCATTTT TCTTACATAG ATTAAAGCTA AATTAAGACA TATTTAGTCA TGAAGAGAGT TGAAAATATT ATGAAATAAA
ACTCCTGAAA TAAAAATAAT TAAATAAAAA GAGAGAAAGG AAGCAAGAGT AAAAGCGACT CTCACCCGAG CCATGTTCTG
AAGTCTTCCC TGCTTGTATG CAACGGCCAG ACACATTTTA GTCGCTCTGC GCTCCTCCGC CTGAAACCGA TTGTTGCAGG
ACAAAGATCC GGGTCGACCC GCCGTAGATC CGATCCAACA AACATGAATA TTTTCAGGTT AGCTGGGGAC ATGACCCATT
TGGCCAGCGT CCTCGTCCTC CTCCTCAAGA TCCACACCAT CAAGTCCTGC GCCGGTGTCT CATTGAAGAC TCAAGAACTC
TATGCACTTG TTTTTGCTTG TCGCTACTTA GATATCTTTA CTAATTTTGT ATCTCTCTAT AATACTGTTA TGAAGTTGAT
ATTCTTGGGA AGCTCGTTTT CTATAGTATG GTACATGAGG TATCACAAGG TTGTTCGTAG ATCGTATGAC AAAGATCAAG
ATACCTTTCG CCATTACTTT CTTGTATTGC CCTGCTTAGT ATTGGCCCTA TTAATCAATG AGAAATTCAC ATTTAAGGAG
GTGATGTGGA CATTTTCCCT TTATTTGGAA GCTGTTGCTA TACTTCCTCA ACTAGTACTT TTACAGAGAA CTAGAAATAT
TGACAATTTG ACTGGACAAT ATGTGTTTCT TCTTGGTGCA TACAGAGGAC TATACATTCT CAACTGGATC TATCGCTACT
TTACTGAGCC CCACTTTGTC CATTGGATAA CATGGATTTC TGGCCTTGTT CAAACACTGC TATATGCTGA TTTCTTCTAT
TACTATTACC AAAGCTGGAA GAACAACCAA AAGCTTCATT TGCCAGCGTG AGTGTATTCT TCCGTTCTTG AAAAACAAGG
GCCTATATGG ACAATTAACA GTGACAATCC ACATATTTGT CTGGACAGTG GTTTCTGATT TACAATTCCC TATTTGTTCG
TTCTTGCCAC CTCAAAATAC TTCTGTACTT ATTACTAGGA AAATATTATA T

>Vigan.04G167300.01
ATGAATATTT TCAGGTTAGC TGGGGACATG ACCCATTTGG CCAGCGTCCT CGTCCTCCTC CTCAAGATCC ACACCATCAA
GTCCTGCGCC GGTGTCTCAT TGAAGACTCA AGAACTCTAT GCACTTGTTT TTGCTTGTCG CTACTTAGAT ATCTTTACTA
ATTTTGTATC TCTCTATAAT ACTGTTATGA AGTTGATATT CTTGGGAAGC TCGTTTTCTA TAGTATGGTA CATGAGGTAT
CACAAGGTTG TTCGTAGATC GTATGACAAA GATCAAGATA CCTTTCGCCA TTACTTTCTT GTATTGCCCT GCTTAGTATT
GGCCCTATTA ATCAATGAGA AATTCACATT TAAGGAGGTG ATGTGGACAT TTTCCCTTTA TTTGGAAGCT GTTGCTATAC
TTCCTCAACT AGTACTTTTA CAGAGAACTA GAAATATTGA CAATTTGACT GGACAATATG TGTTTCTTCT TGGTGCATAC
AGAGGACTAT ACATTCTCAA CTGGATCTAT CGCTACTTTA CTGAGCCCCA CTTTGTCCAT TGGATAACAT GGATTTCTGG
CCTTGTTCAA ACACTGCTAT ATGCTGATTT CTTCTATTAC TATTACCAAA GCTGGAAGAA CAACCAAAAG CTTCATTTGC
CAGCGTGA

>Vigan.04G167300.01
MNIFRLAGDM THLASVLVLL LKIHTIKSCA GVSLKTQELY ALVFACRYLD IFTNFVSLYN TVMKLIFLGS SFSIVWYMRY
HKVVRRSYDK DQDTFRHYFL VLPCLVLALL INEKFTFKEV MWTFSLYLEA VAILPQLVLL QRTRNIDNLT GQYVFLLGAY
RGLYILNWIY RYFTEPHFVH WITWISGLVQ TLLYADFFYY YYQSWKNNQK LHLPA*