VIGGS:GBrowse

Vigan.04G170400.01

Basic Information:

Name:	Vigan.04G170400.01 Multiple alignment Variant Information
Position:	Chr04:24216170..24218210 (- strand)
Length:	2041

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KZ93, Glycine max]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: ribosome (GO:0005840)
	Cellular Component: large ribosomal subunit (GO:0015934)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L13, eukaryotic/archaeal (IPR005755)
	Ribosomal protein L13 (IPR005822)
	Ribosomal protein L13, conserved site (IPR023563)
	Ribosomal protein L13 domain (IPR023564)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:93.28,187.28,138.93,73.24,207.51,506.56,230.00,109.52
Arabidopsis thaliana homolog:	AT5G48760.1

Automatic updates:

Name:	NM_001248173 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499978 (LOC100499978), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249273 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527190 (LOC100527190), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001289209 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 60S ribosomal protein L13a-4-like (LOC100813340), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:24216170..24216644 (- strand)
Length:	475
Type:	three_prime_UTR

Position:	Chr04:24216645..24216788 (- strand)
Length:	144
Type:	CDS

Position:	Chr04:24216983..24217070 (- strand)
Length:	88
Type:	CDS

Position:	Chr04:24217162..24217278 (- strand)
Length:	117
Type:	CDS

Position:	Chr04:24217738..24218009 (- strand)
Length:	272
Type:	CDS

Position:	Chr04:24218010..24218210 (- strand)
Length:	201
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G170400.01
CTTGGTTTAC AGTTCAACGC AAGCGTTAGG CCCATTGGGT GAAAAGCCCA ACCCACACTC TCCGGCAACA AAAAACCCTA
ATCCAGTAAT CCCTCTGCGC CTCCCTCTTA TACTCAAAAC CTTAGCAGAG ACACACAGCA GAATAGACCA AAGAACCAAC
CTTCAGTGTT GTGTGGGAGA GAGAAAGAGA GAGAGAAAAA AATGGTTTCA GGGTCAGGGA TCTGCGCGAA GAGGGTGGTG
GTGGACGCTC GCCACCACAT GCTTGGAAGG TTGGCCTCGA TCGTGGCCAA GGAACTTCTC AATGGGCAGA AGGTGGTGGT
GGTCAGGTGC GAGGAGATTT GCATCTCCGG CGGGCTCGTG AGGCAGAAGA TGAAGTACAT GCGCTTTCTA CGCAAGCGCA
TGAACACCAA ACCCTCTCAC GGCCCCATTC ACTTCCGGGC TCCCGCTAAG ATCTTCTGGC GCACCGTTCG CGGGATGATT
CCTCATAAGA CTAAGCGTGG GGAAGCTGCT CTTGATCGAT TGAAGGTTTA TGAGGGTATT CCTCCTCCAT ACGACAAGAC
TAAGAGGATG GTTGTCCCTG ATGCTCTCAA GGTGTTGAGG CTTCAGAAGG GGCACAAATA CTGTCTTCTA GGCAAATTGT
CATCTGAGGT TGGATGGAAC TATTATGATA CCATCAGGGA ACTGGAAAAG AAGAGGAAGG AGAGGGCACA GTTGTCTTAT
GAGAGGAAGA AGCAGCTTGC CAAATTGAGG GTGAAAGCTG AAAAGGTTGC AGAGGAGAAG CTCGGTTCCC AAATTGAAAT
CCTTGCTCCC GTTAAGTACT GAGTAGGTGT ATGCTAGTTA GTGTTTTGAA GTTTTGGTTT GAGGTGTATA CCCAATTGAA
CTCCATTTCA ATTTTGCTGG TCATCTTGGA CTCTAGATAT GACAATCTTG GAAGTTGTTT TACTTTGTTT GCTTTAGAAT
TTTTATGTCA TCCGATTAAG TTCTATTACA TAATTGTTTT TTTTGTGTTG TCTCTATGGT GTGATATATT GTGGCATTTT
AATCTTACCT CCTGCATGAA GATGGACTAA ATAAAATATT TTACCTTCAG TTTTATGCTC AACAAGATAC ATCGTTTTCT
AGTATTTGTA ATTGTGTAAT TTGATAGAGA TCAAGTGGGA ATCTGAAATG ATGTAATATG ATATCAAAGG GGGACACAGA
CACCACCAAC TTGGTGTCAT TCGACATGTA AACAGGTTCG ATCTCAAAGG TATTATATCC AAAGAAAAGC TACAAATGAA
CATGTGATAT AAAAAAT

[show][hide][copy]CDS

>Vigan.04G170400.01
ATGGTTTCAG GGTCAGGGAT CTGCGCGAAG AGGGTGGTGG TGGACGCTCG CCACCACATG CTTGGAAGGT TGGCCTCGAT
CGTGGCCAAG GAACTTCTCA ATGGGCAGAA GGTGGTGGTG GTCAGGTGCG AGGAGATTTG CATCTCCGGC GGGCTCGTGA
GGCAGAAGAT GAAGTACATG CGCTTTCTAC GCAAGCGCAT GAACACCAAA CCCTCTCACG GCCCCATTCA CTTCCGGGCT
CCCGCTAAGA TCTTCTGGCG CACCGTTCGC GGGATGATTC CTCATAAGAC TAAGCGTGGG GAAGCTGCTC TTGATCGATT
GAAGGTTTAT GAGGGTATTC CTCCTCCATA CGACAAGACT AAGAGGATGG TTGTCCCTGA TGCTCTCAAG GTGTTGAGGC
TTCAGAAGGG GCACAAATAC TGTCTTCTAG GCAAATTGTC ATCTGAGGTT GGATGGAACT ATTATGATAC CATCAGGGAA
CTGGAAAAGA AGAGGAAGGA GAGGGCACAG TTGTCTTATG AGAGGAAGAA GCAGCTTGCC AAATTGAGGG TGAAAGCTGA
AAAGGTTGCA GAGGAGAAGC TCGGTTCCCA AATTGAAATC CTTGCTCCCG TTAAGTACTG A

[show][hide][copy]PROTEIN

>Vigan.04G170400.01
MVSGSGICAK RVVVDARHHM LGRLASIVAK ELLNGQKVVV VRCEEICISG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA
PAKIFWRTVR GMIPHKTKRG EAALDRLKVY EGIPPPYDKT KRMVVPDALK VLRLQKGHKY CLLGKLSSEV GWNYYDTIRE
LEKKRKERAQ LSYERKKQLA KLRVKAEKVA EEKLGSQIEI LAPVKY*