GBrowse Details

Vigan.04G176900.01

Basic Information:
Name: Vigan.04G176900.01
Multiple alignment
Variant Information
Position: Chr04:25442054..25445379 (- strand)
Length: 3326
Functional Information:
Description: Similar to protein. [D7MVB8, Arabidopsis lyrata subsp. lyrata]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.97,1.92,3.60,32.04,1.83,6.36,2.16,5.18
Arabidopsis thaliana homolog: AT4G13220.1
Automatic updates:
Name: NM_001251803 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527102 (LOC100527102), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:25442054..25442345 (- strand)
Length: 292
Type: three_prime_UTR
Position: Chr04:25442346..25442483 (- strand)
Length: 138
Type: CDS
Position: Chr04:25443662..25443766 (- strand)
Length: 105
Type: CDS
Position: Chr04:25443889..25443950 (- strand)
Length: 62
Type: CDS
Position: Chr04:25444910..25445138 (- strand)
Length: 229
Type: CDS
Position: Chr04:25445139..25445379 (- strand)
Length: 241
Type: five_prime_UTR


>Vigan.04G176900.01
ATGAAAAGCA GGCAAATGTT TGGGCTTCAA GACTACCTTA TGGGCCCAAC TTTGTGAGGC TGAGAACAAA GGACTACAAT
GCTACCGTAT TCTTTCTTCT ACTTCGTTGC AAAATCTCAT TTCAATTTGC ACTGACTCCT TCTTCCACAA TGTGTACCTG
AAACAAACCA CAACTTTTTT TTATTGAAAC CAATTTAAGT AATTCATTTT TTCACAGTTA ATATATTTGA GAGTGAATAA
AATGTCTGCT TCCTGTGTTG TTCGCAATTT TTGTTCTGTG ACTTCTGGTT TTCCGAATTG CCGCCAAAAC CAAACCTTGG
TTCCTACCCA TCATCAGTTT CAGTTACGCA ATCCCCTTTT GAGGTTAAAG AAGCAACCTT TCCACTCAAA CACTCATCTC
AAGAGTTCAA GAACTCAGAA GCCTCGTCCC ACTTTTGTAG TTTTCGCAGC ACAATCAAAT TTTCTTAAAG TTCTGCAGAA
TGCATGGAAA GTTGGAAGGG ATGGAATTGA GGCAGGGACT AATCTGGTTC CTAATTCTGT TCCAAGGCCA ATAGCTAGGA
TTTCAGTAAC AATTGTGGCT CTAAGTGTTA CACTTTTTGT ACTCAAGGCA TTCCTCTCTA CGGCTTTCTT TATATTGGCC
ACTATAGGAC TTTCATACTT TGCATACCTA GCATTCAATA AAGATCAAGG ACCTAGAAGG AACCAAGAAA CTACCTCCAC
TCCTATGGAT GATCCAGTGG AAGAAGCTAG AAAGATAATG GAAAAATACA AGTAGCAGCA TCAGTTAAGG TATTGTGAAG
CTCTAAAATT CTGCATATAC ATTAGTTCAG TGTAAGTATT TTTCTATTGA GTTTTAAATT TGATGGATGG ATTGTCAACA
TTTGTGAATG GCATTTTCCA TTTCTAGATC ATATTATAGT CTTTAGCACA GTCATTGCAA ACATTTTCCA CTGCATGGAT
GTTAGTTTTC TTCTTTTTAG GTGAATATGA ATGTTTTTTG GTTCAAGCGT GTTTCGATTT GCTTAAATTT TCTGGGGAAA
TGTTTTTTCT TTCAATAGTT ATACGAG

>Vigan.04G176900.01
ATGTCTGCTT CCTGTGTTGT TCGCAATTTT TGTTCTGTGA CTTCTGGTTT TCCGAATTGC CGCCAAAACC AAACCTTGGT
TCCTACCCAT CATCAGTTTC AGTTACGCAA TCCCCTTTTG AGGTTAAAGA AGCAACCTTT CCACTCAAAC ACTCATCTCA
AGAGTTCAAG AACTCAGAAG CCTCGTCCCA CTTTTGTAGT TTTCGCAGCA CAATCAAATT TTCTTAAAGT TCTGCAGAAT
GCATGGAAAG TTGGAAGGGA TGGAATTGAG GCAGGGACTA ATCTGGTTCC TAATTCTGTT CCAAGGCCAA TAGCTAGGAT
TTCAGTAACA ATTGTGGCTC TAAGTGTTAC ACTTTTTGTA CTCAAGGCAT TCCTCTCTAC GGCTTTCTTT ATATTGGCCA
CTATAGGACT TTCATACTTT GCATACCTAG CATTCAATAA AGATCAAGGA CCTAGAAGGA ACCAAGAAAC TACCTCCACT
CCTATGGATG ATCCAGTGGA AGAAGCTAGA AAGATAATGG AAAAATACAA GTAG

>Vigan.04G176900.01
MSASCVVRNF CSVTSGFPNC RQNQTLVPTH HQFQLRNPLL RLKKQPFHSN THLKSSRTQK PRPTFVVFAA QSNFLKVLQN
AWKVGRDGIE AGTNLVPNSV PRPIARISVT IVALSVTLFV LKAFLSTAFF ILATIGLSYF AYLAFNKDQG PRRNQETTST
PMDDPVEEAR KIMEKYK*