GBrowse Details

Vigan.04G183400.01

Basic Information:
Name: Vigan.04G183400.01
Multiple alignment
Variant Information
Position: Chr04:26502959..26504651 (+ strand)
Length: 1693
Functional Information:
Description: Similar to Type 2 metallothionein. [Q75NH9, Phaseolus angularis]
GO: Molecular Function: metal ion binding (GO:0046872)
InterPro: Metallothionein, family 15, plant (IPR000347)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1628.96,6842.24,1170.67,1322.03,164.99,4036.96,815.01,2070.72
Arabidopsis thaliana homolog: AT5G02380.1
Automatic updates:
Name: NM_001248577 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max metallothionein type 2 (MET2), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001364773 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum class I type 2 metallothionein (MT-2), mRNA.
PubMed ID: 21161305 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:26502959..26503044 (+ strand)
Length: 86
Type: five_prime_UTR
Position: Chr04:26503045..26503109 (+ strand)
Length: 65
Type: CDS
Position: Chr04:26503764..26503938 (+ strand)
Length: 175
Type: CDS
Position: Chr04:26503939..26504651 (+ strand)
Length: 713
Type: three_prime_UTR


>Vigan.04G183400.01
GAACTTGTGT GTGATAATTG TTCTTGTGAC TTGTTCTTCG TCGTTATCTT CTTTTCTCCT GTGTTTGTTT TTTGTTACCT
GAGAAAATGT CTTGCTGCGG TGGTAACTGT GGATGCGGAA GCTCCTGCAA GTGCGGCAGT GGCTGCGGAG GCTGCAAGAT
GTACCCAGAC TTGAGCTACA CGGAGCAAAC AACCACTGAG ACTTTGGTCA TGGGAGTGGC ACCCGTGAAG GTTCAATTCG
AAGGTGCTGA AATGGGTGTT GCTGGTGAGA ATGATGGCTG CAAGTGTGGA TCAAACTGCA CATGCAACCC CTGCACTTGC
AAGTGAGCTT GAATAGCAAA AGCTTGAAGC AGAGATGGAC CTTAATTACA ATTAGCAGCA GGAATAATTA CAATAATTAA
CTATTATCCG TAGTTAAAAA CCTTAAAATT ATGTAAGTCT GTGTGTCTGT TTTCGTTTTC TCTGGTGTTA GGTCTGAACA
CCCTTTAGAA TAAAGTGGTC ATGTCTTGCC CTTGAACAAG TTCAAGTGCT ATGGACTTGT GATGGGATTA TCTAGCCATG
GTTACTTTGG TTTGTTCTGT GTAAAGTTGG CTAATCAGAA TTATCAGTCT CTGCTTATAA TATTATATTA CTGGTGTGAT
TTTGTTAAGA ATTTTATACA ATAAAGGATA ACAATCAGAT AATTACAAAA TCAATACGAA TATTAGTTGG TTCAGTGATG
AAAGTGTGTG AATTTGAAAA CTAAAGGAAG TTGATGTGAA AAAAAGAGGA TCATTTCTCT CCATCTGTTT GGAAGGTATC
ATATGATATT ACGATGGCAT TTTTCCAAAC ACATGGTGAG GTCGGTGCTG GTCCCCTTCT ACTTGAAGTC TGAAGACTGA
AAGTGAGTTC CATGTGCGTG TTTCTGAAAC CAAGGCAGAT TACTATTGCG ATAGTTACAG CTACTGTGGC TCTTTTCGAA
CAATCTTAAT ATTTTCAACT TTTTAATTAA CTTGAAACTT AAAAAATGCA TAAAATTGTA ATTAAACTAA TAAAGGAAA

>Vigan.04G183400.01
ATGTCTTGCT GCGGTGGTAA CTGTGGATGC GGAAGCTCCT GCAAGTGCGG CAGTGGCTGC GGAGGCTGCA AGATGTACCC
AGACTTGAGC TACACGGAGC AAACAACCAC TGAGACTTTG GTCATGGGAG TGGCACCCGT GAAGGTTCAA TTCGAAGGTG
CTGAAATGGG TGTTGCTGGT GAGAATGATG GCTGCAAGTG TGGATCAAAC TGCACATGCA ACCCCTGCAC TTGCAAGTGA


>Vigan.04G183400.01
MSCCGGNCGC GSSCKCGSGC GGCKMYPDLS YTEQTTTETL VMGVAPVKVQ FEGAEMGVAG ENDGCKCGSN CTCNPCTCK*