VIGGS:GBrowse

Vigan.04G185000.01

Basic Information:

Name:	Vigan.04G185000.01 Multiple alignment Variant Information
Position:	Chr04:26780495..26784177 (+ strand)
Length:	3683

Functional Information:

Description:	Similar to Uncharacterized protein. [C6ZRU1, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:108.89,34.73,19.74,23.77,22.29,22.29,31.59,22.06
Arabidopsis thaliana homolog:	AT1G07570.3, AT2G28930.1, AT5G02290.1

Automatic updates:

Name:	NM_001254199 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable serine/threonine-protein kinase NAK-like (LOC100819620), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001254503 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable serine/threonine-protein kinase NAK-like (LOC100793817), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:26780495..26780889 (+ strand)
Length:	395
Type:	five_prime_UTR

Position:	Chr04:26780890..26780941 (+ strand)
Length:	52
Type:	CDS

Position:	Chr04:26781576..26781898 (+ strand)
Length:	323
Type:	CDS

Position:	Chr04:26782126..26782261 (+ strand)
Length:	136
Type:	CDS

Position:	Chr04:26782426..26782568 (+ strand)
Length:	143
Type:	CDS

Position:	Chr04:26782663..26782786 (+ strand)
Length:	124
Type:	CDS

Position:	Chr04:26783193..26783647 (+ strand)
Length:	455
Type:	CDS

Position:	Chr04:26783648..26784177 (+ strand)
Length:	530
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G185000.01
GTGAAAGGTG AAGTCAACCT TCTATTCCAC TTTCGCTGGT TTGCCAAAAG GGTCTAAAAA AGGCTACAAT ATTATCATTT
ACAAAAGCCA CCAGCAACAA AGTGATCAAA GTTCCTGTTT TGACCCTTCT AGCTTCCTTC CACGACCCTT CTCATCAAAC
CCCTAATCAT AAAGGGTCGA AAAAGGCTTC GGAAATCTAA GCTACTGAGT GCGTAATTAC TGAGATCTGC CTTCATCCTG
GTGGGTTCAA CAGTGTTTCA TTCTGGGGTT TGTTGGCCCT TTTTTCCTCA TTTCTGCAAA TTTGCATTTT CACCCTTTAG
AGTTTCAGAC TATGTGGTTT TTTGCTTGCA TCTGAAAGGC TCAACCTTTG ACTTGGTCAC AGGGGTGGTT TGTTGATGGG
TGCTTGCTGG AGTAATAGGA TTAAGGCTGT GAGTCCTTCC AATACAGGGA TAACCTCGAG AAGTGTCAGC AGGAGTGGCC
ATGACATCAG CTCAGCTAGC AGGAACTCAT CAGCCTCCAT ATCCGTCACT TCTCGGAGTG AAGGTGAAAT CTTGCAATCG
TCCAACTTGA AAAGCTTCAG CTATAATGAG CTAAGAGTCG CCACAAGAAA TTTCCGCCCA GATAGTGTCT TGGGGGAGGG
TGGGTTTGGT TCAGTTTTTA AGGGCTGGAT TGATGAACAT TCACTTACTG CTACCAAACC GGGAATAGGC ATGATTGTTG
CTGTGAAGAA GCTTAACCAA GATGGGTTCC AGGGTCACAG AGAATGGTTG GCTGAAATCA ACTATCTTGG GCAACTGCAG
CATCCTAATC TTGTCAAGTT AATAGGATAC TGCTTTGAGG ATGAGCATCG GCTTTTGGTT TACGAGTTCA TGCCTAAGGG
TAGCATGGAA AATCATCTTT TTAGAAGAGG TTCTTACTTT CAGCCATTCT CATGGAGTTT GCGACTGAAA ATAGCTCTTG
GGGCTGCGAA GGGCCTTGCT TTTCTTCACA GTACAGAACG TAAAGTCATA TATCGTGACT TTAAAACTTC AAATATCCTA
CTTGATACAC ATTATAACGC CAAACTTTCT GATTTTGGGT TGGCCAGAGA TGGTCCAACT GGTGATAAAA GCCATGTCTC
TACCAGGGTC ATGGGAACCC GAGGATATGC GGCTCCAGAG TATTTAGCTA CAGGTCATCT CACTGCCAAG AGTGACGTAT
ATAGTTTTGG AGTAGTTCTT CTGGAAATGA TATCGGGAAG ACGAGCCATA GACAAGAACC AGCCATCTGG GGAGCATAAC
CTTGTTGAAT GGGCAAAACC TTACCTTTCT AATAAACGAA GAGTTTTCCG TATAATGGAT CCACGTTTGG AAGGTCAATA
TTCACATACT CGAGCTCAAG CAGCAGCTGC ACTTGCCATG CAATGTCTTT CTGTAGAGTC CAAGTGCAGG CCAACTATGG
ATGAGGTGGT AAAAGCATTG GAGCAGCTTC AGGAATCAAA GGACATGCAG AGAAAAGGTG CTGATCATAA ACATCATCAT
GTACGCAATT CCGGCCAAGG CCGATCAACC GGCACCCCTG GTGGTGCAGA TGTGCCTAGA ATTGCTTCTG CTTATCCTAG
ACCTACAGCT TCTCTCCTTG GCGGTTGATA CACTTTTGTG ATGCGGCAAG TAGGAAGCAG AATACACATG ATTCAGAGGT
TTAGGTCTGG CATGAACCAT ATTTATGTAA GCAATGTATA GTTTGCATTA TTTCTGTTAT ATTTTGTGCT ATATATAGAT
TTTTTTTGCT GTTGTGGTCC TGATTGTTAG ACATGCAAGA GTCTAATGTG GATCCTTGAG ATTATGGTGT TCATTAATTT
TGAACCCTGT AGAAATTTGC AACACTGCCC ATGTGGTTTA TGCTCTTCAT ATTTATCTTT TGCATTAAAT ATGTGAAAAA
GTCTTAATAA TGTTGACTAC CTGACATTCC TCCCCAACCA CCATGTGCAC CCTGCTTTTC ATCTGCTTCA AATCATCCTG
GTAGCATTGT GGGTCACTTA TGGTTCAACC GATTTTCTTT ATCTTTTGAA ACATTTAAGT CAAATGTCCC ACCTGTGACA
TTTGTTGCAG TGACATGGAT CTGGGAGAAT CATTTTAAGT TATTTCTTGA AAATATAAAA GTATACAAAC CAGTGAAG

[show][hide][copy]CDS

>Vigan.04G185000.01
ATGGGTGCTT GCTGGAGTAA TAGGATTAAG GCTGTGAGTC CTTCCAATAC AGGGATAACC TCGAGAAGTG TCAGCAGGAG
TGGCCATGAC ATCAGCTCAG CTAGCAGGAA CTCATCAGCC TCCATATCCG TCACTTCTCG GAGTGAAGGT GAAATCTTGC
AATCGTCCAA CTTGAAAAGC TTCAGCTATA ATGAGCTAAG AGTCGCCACA AGAAATTTCC GCCCAGATAG TGTCTTGGGG
GAGGGTGGGT TTGGTTCAGT TTTTAAGGGC TGGATTGATG AACATTCACT TACTGCTACC AAACCGGGAA TAGGCATGAT
TGTTGCTGTG AAGAAGCTTA ACCAAGATGG GTTCCAGGGT CACAGAGAAT GGTTGGCTGA AATCAACTAT CTTGGGCAAC
TGCAGCATCC TAATCTTGTC AAGTTAATAG GATACTGCTT TGAGGATGAG CATCGGCTTT TGGTTTACGA GTTCATGCCT
AAGGGTAGCA TGGAAAATCA TCTTTTTAGA AGAGGTTCTT ACTTTCAGCC ATTCTCATGG AGTTTGCGAC TGAAAATAGC
TCTTGGGGCT GCGAAGGGCC TTGCTTTTCT TCACAGTACA GAACGTAAAG TCATATATCG TGACTTTAAA ACTTCAAATA
TCCTACTTGA TACACATTAT AACGCCAAAC TTTCTGATTT TGGGTTGGCC AGAGATGGTC CAACTGGTGA TAAAAGCCAT
GTCTCTACCA GGGTCATGGG AACCCGAGGA TATGCGGCTC CAGAGTATTT AGCTACAGGT CATCTCACTG CCAAGAGTGA
CGTATATAGT TTTGGAGTAG TTCTTCTGGA AATGATATCG GGAAGACGAG CCATAGACAA GAACCAGCCA TCTGGGGAGC
ATAACCTTGT TGAATGGGCA AAACCTTACC TTTCTAATAA ACGAAGAGTT TTCCGTATAA TGGATCCACG TTTGGAAGGT
CAATATTCAC ATACTCGAGC TCAAGCAGCA GCTGCACTTG CCATGCAATG TCTTTCTGTA GAGTCCAAGT GCAGGCCAAC
TATGGATGAG GTGGTAAAAG CATTGGAGCA GCTTCAGGAA TCAAAGGACA TGCAGAGAAA AGGTGCTGAT CATAAACATC
ATCATGTACG CAATTCCGGC CAAGGCCGAT CAACCGGCAC CCCTGGTGGT GCAGATGTGC CTAGAATTGC TTCTGCTTAT
CCTAGACCTA CAGCTTCTCT CCTTGGCGGT TGA

[show][hide][copy]PROTEIN

>Vigan.04G185000.01
MGACWSNRIK AVSPSNTGIT SRSVSRSGHD ISSASRNSSA SISVTSRSEG EILQSSNLKS FSYNELRVAT RNFRPDSVLG
EGGFGSVFKG WIDEHSLTAT KPGIGMIVAV KKLNQDGFQG HREWLAEINY LGQLQHPNLV KLIGYCFEDE HRLLVYEFMP
KGSMENHLFR RGSYFQPFSW SLRLKIALGA AKGLAFLHST ERKVIYRDFK TSNILLDTHY NAKLSDFGLA RDGPTGDKSH
VSTRVMGTRG YAAPEYLATG HLTAKSDVYS FGVVLLEMIS GRRAIDKNQP SGEHNLVEWA KPYLSNKRRV FRIMDPRLEG
QYSHTRAQAA AALAMQCLSV ESKCRPTMDE VVKALEQLQE SKDMQRKGAD HKHHHVRNSG QGRSTGTPGG ADVPRIASAY
PRPTASLLGG *